PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586026.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 314aa    MW: 35020.5 Da    PI: 7.1921
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-33168225259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  XP_013586026.1 168 EDGYRWRKYGQKAVKNSIYPRSYYRCTTQRCNVKKRVERSFQDPTVVITTYEGQHNHP 225
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381309.9E-1011314IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.0E-34152227IPR003657WRKY domain
SuperFamilySSF1182903.4E-29159227IPR003657WRKY domain
PROSITE profilePS5081131.456162227IPR003657WRKY domain
SMARTSM007742.1E-38167226IPR003657WRKY domain
PfamPF031061.5E-25168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSNEIKDLYS YQYLSSLSLY ELMNLPTSTP SSYGNNGFVP SSYSLADCFQ SSPGAAYDSL  60
LHKTLGVSPS SSEVFNSLVD QESKHDVTND VIGETPTRVS ASSSSSEADL PGEDSGKSQR  120
KRELVGDGRE ENQNQSSKKV GKTKKKEEKK QREPRVSFMT KSEVDHLEDG YRWRKYGQKA  180
VKNSIYPRSY YRCTTQRCNV KKRVERSFQD PTVVITTYEG QHNHPLPTNL RGSSAAAAMY  240
SADFMTPGSF THDMFRSSAY TSGGSAAAAL DYGYEQSSYG SVNANPNAHQ EYRQGGEYEL  300
LKEIFPSIFF KQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28158227877Probable WRKY transcription factor 4
2lex_A1e-28158227877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586026.10.0PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ21e-171WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0D3A4050.0A0A0D3A405_BRAOL; WRKY transcription factor
STRINGBo1g019260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-144WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]