PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585812.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 316aa    MW: 34217.8 Da    PI: 9.4839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05527123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k F++  +L  Hir H
  XP_013585812.1  5 FVCKFCNKKFPSGKSLGGHIRIH 27
                    89*******************99 PP
2zf-C2H211.20.0012265287123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k++s+   L  H r+H
  XP_013585812.1 265 HECPICFKVYSSGQALGGHKRSH 287
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-5228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.14E-8327No hitNo description
SMARTSM003550.0065527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094532IPR007087Zinc finger, C2H2
PfamPF139123.6E-6527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-8260287No hitNo description
SMARTSM003550.43265287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141265292IPR007087Zinc finger, C2H2
PfamPF139122.7E-10265287IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEKEFVCKFC NKKFPSGKSL GGHIRIHSPQ SSVHSDSFIG KNNNSKKRLV DQRALASHMD  60
CHNYEGKKMG TQSASETTTT SSGPTMIKRS KKHSSSESFS TVSWSSDPGI DQGSKDLMFL  120
HLGRKDYNFN SLVPESSENN SEILETKTSS GELLKTPAKV SVVDDSSSDS DYFMNGPKKS  180
DSDVSVGGSL RNTGFGSGFN SFKNGDDLGV KEGGSKHELG KSKRVSPFYE SDSSADTNSK  240
FHRSSDGKSP MAKKASGGVK NSKGHECPIC FKVYSSGQAL GGHKRSHTIA NQAQRAKRKA  300
ADMQFDLNLP AEDTDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585812.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D3CD230.0A0A0D3CD23_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EGN90.0A0A3P6EGN9_BRAOL; Uncharacterized protein
STRINGBo5g042740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2035156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.16e-55C2H2-like zinc finger protein