PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585413.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 262aa    MW: 30187.5 Da    PI: 5.5908
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.8e-2168121356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fek++++  e++++LA+klgL+ rqV+vWFqNrRa++k
  XP_013585413.1  68 KKRRLTHEQVHLLEKSFEKENKLEPERKTQLANKLGLQPRQVSVWFQNRRARWK 121
                     56689************************************************9 PP
2HD-ZIP_I/II128.52.7e-4168159293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl++eqv+lLE+sFe+e+kLeperK++la++Lglqprqv vWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ k+++ Lr+++++
  XP_013585413.1  68 KKRRLTHEQVHLLEKSFEKENKLEPERKTQLANKLGLQPRQVSVWFQNRRARWKTKQLERDFNLLKSSYDQLLSNYDSILKDNHLLRSQVTS 159
                     9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-2152125IPR009057Homeodomain-like
PROSITE profilePS5007117.92963123IPR001356Homeobox domain
SMARTSM003899.7E-2066127IPR001356Homeobox domain
PfamPF000463.4E-1868121IPR001356Homeobox domain
CDDcd000861.17E-1868124No hitNo description
Gene3DG3DSA:1.10.10.607.3E-2270129IPR009057Homeodomain-like
PRINTSPR000315.4E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000315.4E-6103119IPR000047Helix-turn-helix motif
PfamPF021831.2E-15123165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MESNKFFFNP STSHGNMFFL GNLNPVVQGS MMNMEESSSK RRPFFCSPDD LLYDDVDVDY  60
YDDHTPDKKR RLTHEQVHLL EKSFEKENKL EPERKTQLAN KLGLQPRQVS VWFQNRRARW  120
KTKQLERDFN LLKSSYDQLL SNYDSILKDN HLLRSQVTSL AGKVQAKAET APYQVPESNQ  180
LDPVNMNRFE PAIKTEDRLS SGSAVLDEDA PHQLRDSCDS YFPTIVPIHH SAEEHNNGSG  240
NDTGCFADVF VQGESFGFWG WT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.4050.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585413.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528541e-123AK352854.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-H09.
GenBankAK3535351e-123AK353535.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585413.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022831e-118HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0D3CND70.0A0A0D3CND7_BRAOL; Uncharacterized protein
STRINGBo5g155120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-120homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]