PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585188.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 187aa    MW: 21699 Da    PI: 4.7934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85e-1392136347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++++  ++G g+Wk+++r+  k+R++kq+ s+ qky
   XP_013585188.1  92 PWTAKEHGDFLKGLDEFGRGDWKSVSREYVKTRSAKQVASHAQKY 136
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071747653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-983140IPR009057Homeodomain-like
PROSITE profilePS512941685141IPR017930Myb domain
SuperFamilySSF466897.49E-1487140IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-1488140IPR006447Myb domain, plants
SMARTSM007174.4E-789139IPR001005SANT/Myb domain
PfamPF002494.2E-1092136IPR001005SANT/Myb domain
CDDcd001673.95E-692137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MMAWWEQWGR DEDKMFEEAL VLTENVPNRF EAIASYLEMP LEVVKHYYDA LVRDVELIES  60
DRYGTIDYQD HADGILSPET KHMDKDNKRG RPWTAKEHGD FLKGLDEFGR GDWKSVSREY  120
VKTRSAKQVA SHAQKYFQRQ DMENHAKKRS SINDMTLADV NDADDVPAPR SDSEATMDPA  180
HFGQQTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585188.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585188.11e-139PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A0D3CLD91e-137A0A0D3CLD9_BRAOL; Uncharacterized protein
STRINGBo5g137250.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17289711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.12e-45MYB_related family protein