PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013585107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 456aa MW: 50794.9 Da PI: 9.0092 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F r nL+ H r H XP_013585107.1 77 FQCEVCKKRFQREQNLQLHKRGH 99 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.23E-7 | 76 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-6 | 76 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0038 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 1.1E-4 | 77 | 99 | No hit | No description |
PROSITE profile | PS50157 | 11.032 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 52 | 118 | 148 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 141 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.23E-7 | 148 | 173 | No hit | No description |
SMART | SM00355 | 150 | 153 | 173 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence Send to blast |
MSSSYNNTIS SSSTQSFPLL AIGANNFNRE ETAMTMNQRP NSVSPPPRRL RNKPGNPSPD 60 AEVIALTPEE IMATNRFQCE VCKKRFQREQ NLQLHKRGHN LPFNLKQKSD EEVRRKVYVC 120 PEPTCVYHDP SRALGDLTGI KKHYYRKHGE KKFKCEKCDK CYAVESDCKA HSKICGTKEY 180 RCVCDTKFSR XLTIXLLRRD IHRSMRFCTY THRSIRSGNP NLSFTEMLAA AGGNDGSSRH 240 GFYDGASSAV SHNHFGNNSN IGFAPLAPGH NLNRSSSQKF EDIFPQSTNP NHVPTNFPMQ 300 YPSNQGLLAR NDQNLMNQHG LINSNNNNDN LFNPGYFQAN TQNLSDQTGA PLFNHGDNNV 360 PPALLRGSSV AANNFGGNGN VNFQGQMNSL AATSDHQGRP GSSIFDDHRF GNNLSMGGPD 420 RRTLDFLGVN DRGGRNEPPL DLDIKFSDPN NPFGNV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-13 | 149 | 190 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 1e-13 | 149 | 190 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013585107.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189499 | 0.0 | AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585107.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: protein indeterminate-domain 6, chloroplastic-like | ||||
Swissprot | Q8RWX7 | 1e-173 | IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic | ||||
TrEMBL | M4EBP5 | 0.0 | M4EBP5_BRARP; Uncharacterized protein | ||||
STRING | Bra026204.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo5g019790.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3678 | 17 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-153 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|