PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584958.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 384aa    MW: 41638 Da    PI: 7.4369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045168190123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_013584958.1 168 YQCKTCDRTFPSFQALGGHRASH 190
                     9***********99999998887 PP
2zf-C2H2130.0003247269123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_013584958.1 247 HECGICGAEFTSGQALGGHMRRH 269
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-8167190No hitNo description
PfamPF139122.3E-12167192IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471168195IPR007087Zinc finger, C2H2
SMARTSM003550.028168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-8242269No hitNo description
Gene3DG3DSA:3.30.160.607.9E-4245271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11246271IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93247271IPR007087Zinc finger, C2H2
SMARTSM003550.047247269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
METAEEAISA AKEQALILKG KRTKRQRLQS PIPFSIVPPM SSQEPDVEDE STSLVSKEKS  60
LNDEINTNKN DNNMLSNGVT SPASSSSNNN ATLKTAADEE DQDMANCLIL LAQGHYTPQQ  120
QPQQTRQFMM SYQESGNNNN NAYRSSSRRF LETSNGTTSG GRAGYYVYQC KTCDRTFPSF  180
QALGGHRASH KKPKAAAGLH SDHDLKKSIY NDAVSLHLNN VPAATPNNNS SHRSLVVYGK  240
ANNNKVHECG ICGAEFTSGQ ALGGHMRRHR GAVVASAASA STATVRVAAT AGTANTALSL  300
SPMSFDQMSV HPVQAPVKRA RSAVVSLDLD LNLPASEDVN RVNGLSFASK QEQEQEHEHE  360
QTHQREEQKT LVLSSAPTLV DCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584958.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_013670327.10.0zinc finger protein ZAT5-like
TrEMBLA0A0D3CLF10.0A0A0D3CLF1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EPX20.0A0A3P6EPX2_BRAOL; Uncharacterized protein
STRINGBo5g137370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-150C2H2 family protein