PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 20391.7 Da PI: 9.8641 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 97 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C ksF+ L +H t H XP_013584765.1 97 WKCGYCRKSFNEDKFLDQHFATrH 120 58**********999999988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 99 | 120 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MITPSDVPSR WRKKSPNGFR CRLRLFSCSM GRLKESSPVI LLLLLFPLLL HQSLTKYLTP 60 FVERERYQIP DKCRLHPDND LYRDQEQHKV HVDVYEWKCG YCRKSFNEDK FLDQHFATRH 120 FNLLNTTGTK CLADLCGALH CDFVLSSKKA KSKCNPAAAA KNRVISARVL LIHASQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584765.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189320 | 9e-70 | AC189320.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584765.1 | 1e-129 | PREDICTED: uncharacterized protein LOC106293642 | ||||
TrEMBL | A0A0D3CJU8 | 1e-106 | A0A0D3CJU8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F2X2 | 1e-106 | A0A3P6F2X2_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g126890.1 | 1e-106 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-68 | C2H2-like zinc finger protein |