PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584718.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 601aa    MW: 66992.1 Da    PI: 9.9853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07499548147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_013584718.1 499 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 548
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.735494553IPR017930Myb domain
SMARTSM007173.7E-6498551IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9499549IPR009057Homeodomain-like
CDDcd116601.23E-15500550No hitNo description
SuperFamilySSF466893.05E-15500581IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MVLQRRLDYG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGNSSSS  60
SNNAIGDGNE EDQCAVKTEP LYGGVQKVVE ERNCDHIHDN NAERRFFVSE ILPKTHGMES  120
FDRSPPPPKD FHFGSTSGVT SDSSEKLGTQ ELGQSVCFRS ETNDKISMHG RLTNNCEPEL  180
TRNVVAEDKH HIGSCFKKPI PPSVCSDDGE NFSARYTTKT FRSTLRIGDR KIKKVLASKY  240
CKVSSKQKDT TVNNSDLDLK PSYYNKKPCL KSLRSERRYP IKKRRYFDGY TASQSEETPK  300
KGSGFMSTIA CQKQPALQSR DSHVKLGIKS FKVPELFIEI PETATVGSLK RTVLEAVTTI  360
LEGGLRIGVL VHGKKVRDDS KMLLQSGISL DTLSDTLGFC LEPNPPQSTK PLSPEDSDCV  420
RPFNVPHSLT RCLASQGKHA KPSNSVESDL DSKPSAPNRA KPVYSRALIP VAPPLHAQAL  480
NVVPPRKPKR SEVAQRRIRR PFSVAEVEVL VQAVERLGTG RWRDVKLRAF DNAKHRTYVD  540
LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLMAHAYWS QQQGKQQLLE GPHKLETSLG  600
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-574865884106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584718.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584718.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0D3C8A90.0A0A0D3C8A9_BRAOL; Uncharacterized protein
STRINGBo5g008270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2