PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 307aa MW: 34698.4 Da PI: 7.9493 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.5e-07 | 89 | 111 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg XP_013584658.1 89 YPICS-FAAAGDCPRGSQCPHMHG 111 68999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.455 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.62 | 28 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.042 | 29 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.211 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.2E-10 | 136 | 214 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.21E-9 | 150 | 221 | No hit | No description |
CDD | cd00162 | 0.00235 | 154 | 214 | No hit | No description |
PROSITE profile | PS50089 | 12.386 | 155 | 213 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 6.8E-8 | 155 | 212 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 8.7E-8 | 155 | 212 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 179 | 188 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.253 | 242 | 271 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.75 | 242 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MSDRILCKFF IHGSCLKGEH CEYSHDSNVC TFYQKGICLY GSRCRNEHVR TTTSQPQSLS 60 PSNVPPPQQK GDDNNNNNND VCYIHPREYP ICSFAAAGDC PRGSQCPHMH GDICSTCGKK 120 CLHPFRPEER EEHTKECQKK QKHIEALKKS QEIECSVCLD RVLSKATPGE RKFGLLTECH 180 HPFCIQCIRN WRSSAPVSGM DVNSTLRACP ICRKLSYFVV PSVVWYSTPD EKKEIVDIYK 240 AKLRSINCKH FNFGNGNCPF GGSCFYKHAY SDGHVDEVVV RNLGSQEGET VIADSIRLSE 300 FLGRVHI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584658.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584655.1 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin | ||||
Refseq | XP_013584658.1 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q6IDS6 | 0.0 | C3H35_ARATH; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A0D3AF21 | 0.0 | A0A0D3AF21_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g145040.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-170 | C3H family protein |