PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584655.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 307aa    MW: 34698.4 Da    PI: 7.9493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-0789111326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  XP_013584655.1  89 YPICS-FAAAGDCPRGSQCPHMHG 111
                     68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.455128IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7426IPR000571Zinc finger, CCCH-type
SMARTSM003560.622850IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0422951IPR000571Zinc finger, CCCH-type
SMARTSM003560.02486112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.21186113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.2E-10136214IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.21E-9150221No hitNo description
CDDcd001620.00235154214No hitNo description
PROSITE profilePS5008912.386155213IPR001841Zinc finger, RING-type
PfamPF000976.8E-8155212IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001848.7E-8155212IPR001841Zinc finger, RING-type
PROSITE patternPS005180179188IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.253242271IPR000571Zinc finger, CCCH-type
SMARTSM003560.75242270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSDRILCKFF IHGSCLKGEH CEYSHDSNVC TFYQKGICLY GSRCRNEHVR TTTSQPQSLS  60
PSNVPPPQQK GDDNNNNNND VCYIHPREYP ICSFAAAGDC PRGSQCPHMH GDICSTCGKK  120
CLHPFRPEER EEHTKECQKK QKHIEALKKS QEIECSVCLD RVLSKATPGE RKFGLLTECH  180
HPFCIQCIRN WRSSAPVSGM DVNSTLRACP ICRKLSYFVV PSVVWYSTPD EKKEIVDIYK  240
AKLRSINCKH FNFGNGNCPF GGSCFYKHAY SDGHVDEVVV RNLGSQEGET VIADSIRLSE  300
FLGRVHI
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584655.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584655.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
RefseqXP_013584658.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0D3AF210.0A0A0D3AF21_BRAOL; Uncharacterized protein
STRINGBo1g145040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-170C3H family protein