PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 261aa MW: 29412.7 Da PI: 5.7162 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.4e-31 | 71 | 129 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY++eHnh+ XP_013584462.1 71 SDSWSWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMILITYTSEHNHP 129 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-32 | 63 | 131 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.179 | 65 | 131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 66 | 131 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-38 | 70 | 130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-27 | 72 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MKRGLDMARS YNDHESSQET GPESPNSLTF NATISSQSHK RSRRSIEKRV VNIPMKDIEG 60 SRHKGDTTPP SDSWSWRKYG QKPIKGSPYP RGYYRCSSTK GCPARKQVER SRDDPTMILI 120 TYTSEHNHPW PLASSSRNGP KPKTEPKLEP EVLPEVEREE EDDDNNKFMV LGREIQTTPS 180 CVVDEFAWFS EMETTSSTIL ESPIFSAEKK TAVSASADKV AVFFPMGEED ESLFADLGEL 240 PECSAVFSHR SRVVGSQVEI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-22 | 48 | 131 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 2e-22 | 48 | 131 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584462.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430071 | 0.0 | KF430071.1 Brassica rapa WRKY transcription factor 65 (WRKY65) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584462.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 isoform X1 | ||||
Swissprot | Q9LP56 | 1e-150 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0D3CEG9 | 0.0 | A0A0D3CEG9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g058590.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5383 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-153 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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