PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584459.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 446aa    MW: 50121.2 Da    PI: 9.31
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073388410123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_013584459.1 388 HECPICFRVFKSGQALGGHKRSH 410
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-6535No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5632IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.32931IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-4932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.07189111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78389116IPR007087Zinc finger, C2H2
SuperFamilySSF576674.08E-790111No hitNo description
Gene3DG3DSA:3.30.160.605.7E-491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
PfamPF139120.001491113IPR007087Zinc finger, C2H2
SuperFamilySSF576674.08E-7383410No hitNo description
SMARTSM003550.14388410IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974388410IPR007087Zinc finger, C2H2
PfamPF139123.8E-10388410IPR007087Zinc finger, C2H2
PROSITE patternPS000280390410IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEQFKERKFV CKFCSKRFAC GKSLGGHIRT HMNKENSADS DEDEHNKLRI DENGGQASYG  60
LRENPKKNKK FVVHRDMIAL KHQHQQQLLY CRECGKGFTS SKALCGHMAC HSEREKILMD  120
GQSDTEASSS PIRRRSKRAV KHHHNHKADA FVDGDSIMDQ SDSSASEIEP EQEETALSLM  180
MLSRDSSFKK VRNLVVNSLA ESSDNNSVIL ETKSSSGEQL KILHVKNVEE FCKKDKLGGV  240
DNGDVLYDSD NSDSGYFRNG PKKLDSDVSV DGFLKNNASS NKSAMGFNSY TPKKEKSLNR  300
FRNEWSGSGS GRSSTKYDLR QSKRGFPCYG RKKIKYEFTE SVYDSGDQLS LETDSCADTN  360
RSIKKIHNSK PPMVKKVSGG AKKKSKGHEC PICFRVFKSG QALGGHKRSH FIGSQDHRTL  420
VIQHHHQVAH DMHTLIDLNL PAPIDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609660.0HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584457.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013584458.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013584459.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013695610.10.0zinc finger protein ZAT4-like
TrEMBLA0A0D3CD210.0A0A0D3CD21_BRAOL; Uncharacterized protein
STRINGBo5g042720.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein