PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584276.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 407aa    MW: 44257.7 Da    PI: 5.7989
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31203261259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  XP_013584276.1 203 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 261
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-31196263IPR003657WRKY domain
PROSITE profilePS5081132.879197263IPR003657WRKY domain
SuperFamilySSF1182903.14E-26200263IPR003657WRKY domain
SMARTSM007746.3E-38202262IPR003657WRKY domain
PfamPF031066.9E-26204261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDNYQGDLRD ILRGIDGGHV LSPELPPSPP RIWPLPQPSP SDLHHINPFG DPFVSMTDPL  60
LQELNAVTNS GYFSTADNNN NNCFLVPKVL EDDHIKSQCS VFPRIRISHS NIISDSSPCN  120
SPAMSAHVFA AAAAASPRGV INVDTNSPRN CLLVDGNTFS SQIQISSPPN LGPKRRQSQA  180
KKVVCIPAPA AMNSRSSGEV VPSDLWAWRK YGQKPIKGSP FPRGYYRCSS SKGCSARKQV  240
ERSRTDPNML VITYTSEHNH PWPIQRNALA GSTRSSSNPN SSKSSTATAP SNGPPNNTHS  300
PSPASPSPLP ASAVKDEQRE EDMELENVEN DYDNQFAPYR PELPDQHQPD DFFADLEELE  360
EDSLSMFLSQ GVAGYGSNKT TASNGISNFG GWSGANNSND DRDSRSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25177263279Disease resistance protein RRS1
5w3x_D2e-25177263279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584276.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283430.0AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBankAY0526460.0AY052646.1 Arabidopsis thaliana WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
GenBankBT0064680.0BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584276.10.0PREDICTED: probable WRKY transcription factor 14 isoform X2
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A0D3CEZ10.0A0A0D3CEZ1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F9I60.0A0A3P6F9I6_BRAOL; Uncharacterized protein
STRINGBo5g063280.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-168WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]