PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013584275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 413aa MW: 44954.5 Da PI: 5.5916 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4e-31 | 209 | 267 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ XP_013584275.1 209 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 267 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-31 | 202 | 269 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.879 | 203 | 269 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-26 | 206 | 269 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-38 | 208 | 268 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-26 | 210 | 267 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 413 aa Download sequence Send to blast |
MCSVFEMDNY QGDLRDILRG IDGGHVLSPE LPPSPPRIWP LPQPSPSDLH HINPFGDPFV 60 SMTDPLLQEL NAVTNSGYFS TADNNNNNCF LVPKVLEDDH IKSQCSVFPR IRISHSNIIS 120 DSSPCNSPAM SAHVFAAAAA ASPRGVINVD TNSPRNCLLV DGNTFSSQIQ ISSPPNLGPK 180 RRQSQAKKVV CIPAPAAMNS RSSGEVVPSD LWAWRKYGQK PIKGSPFPRG YYRCSSSKGC 240 SARKQVERSR TDPNMLVITY TSEHNHPWPI QRNALAGSTR SSSNPNSSKS STATAPSNGP 300 PNNTHSPSPA SPSPLPASAV KDEQREEDME LENVENDYDN QFAPYRPELP DQHQPDDFFA 360 DLEELEEDSL SMFLSQGVAG YGSNKTTASN GISNFGGWSG ANNSNDDRDS RSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-25 | 183 | 269 | 2 | 79 | Disease resistance protein RRS1 |
5w3x_D | 2e-25 | 183 | 269 | 2 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013584275.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK228343 | 0.0 | AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23. | |||
GenBank | AY052646 | 0.0 | AY052646.1 Arabidopsis thaliana WRKY transcription factor 14 (WRKY14) mRNA, complete cds. | |||
GenBank | BT006468 | 0.0 | BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584275.1 | 0.0 | PREDICTED: probable WRKY transcription factor 14 isoform X1 | ||||
Swissprot | Q9SA80 | 0.0 | WRK14_ARATH; Probable WRKY transcription factor 14 | ||||
TrEMBL | A0A0D3CEZ1 | 0.0 | A0A0D3CEZ1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F9I6 | 0.0 | A0A3P6F9I6_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g063280.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30650.1 | 1e-169 | WRKY DNA-binding protein 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|