PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013583917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 144aa MW: 16766.8 Da PI: 9.8587 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.6e-32 | 65 | 123 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYY+Ct +gC+vkk+v+r + d+ vv++tY+g H+h+ XP_013583917.1 65 LDDGYRWRKYGQKAVKNNPFPRSYYKCTEKGCRVKKQVQRLSGDEGVVVTTYQGVHTHP 123 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-34 | 50 | 123 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-29 | 57 | 124 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.871 | 60 | 125 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 65 | 124 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-26 | 66 | 123 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006817 | Biological Process | phosphate ion transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MEDRSCQVLF PSSSVDHRLS GDQTQINTSS SLQQHNTNKE EKHKSKKKER EARFAFQTRS 60 QVDILDDGYR WRKYGQKAVK NNPFPRSYYK CTEKGCRVKK QVQRLSGDEG VVVTTYQGVH 120 THPVDTPSDN FHHILTQMHI FPPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-28 | 55 | 128 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-28 | 55 | 128 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00325 | DAP | Transfer from AT3G01970 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013583917.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC246580 | 0.0 | KC246580.1 Brassica napus WRKY transcription factor 45.1 (WRKY45.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009124053.1 | 1e-106 | PREDICTED: probable WRKY transcription factor 45 | ||||
Refseq | XP_013583917.1 | 1e-106 | PREDICTED: probable WRKY transcription factor 45 | ||||
Refseq | XP_022575702.1 | 1e-106 | probable WRKY transcription factor 45 | ||||
Swissprot | Q9S763 | 2e-68 | WRK45_ARATH; Probable WRKY transcription factor 45 | ||||
TrEMBL | A0A0D3CNB1 | 1e-105 | A0A0D3CNB1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397ZGD6 | 1e-105 | A0A397ZGD6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FHH9 | 1e-105 | M4FHH9_BRARP; Uncharacterized protein | ||||
TrEMBL | V9LYL2 | 1e-105 | V9LYL2_BRANA; WRKY transcription factor 45.1 | ||||
STRING | Bra040557.1-P | 1e-105 | (Brassica rapa) | ||||
STRING | Bo5g153870.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01970.1 | 1e-69 | WRKY DNA-binding protein 45 |
Publications ? help Back to Top | |||
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