PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583765.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 388aa    MW: 44125.6 Da    PI: 5.9993
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11339386247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE+  l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
   XP_013583765.1 339 KFWTPEEEAVLREGVKEYGKS-WKEIKNANPevfAERTEVDLKDKWRNL 386
                      67*****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.624333388IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-13334388IPR009057Homeodomain-like
SuperFamilySSF466895.96E-13335387IPR009057Homeodomain-like
SMARTSM007175.6E-5337388IPR001005SANT/Myb domain
CDDcd116604.71E-15339388No hitNo description
PfamPF002496.0E-9341386IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEVMDKWVAE FFIRRQKNPR VSPTNLLSAL KFSESAGDCS NNLKKASVLR DISDSLIRGN  60
VSEGMLDLLE TLEKLHQGSS VLTESHRSAY CWTAAECTVR LMWPSSASEG LYGDAVERIW  120
TKRIGVLKER GSGLVSEELL KWEADLRKAV EDDEVYKRIR ESNVRYSAVC FLNQLLKEQW  180
AVLGSCSLES VAQRMLLKRR KADKGSREGP NGVGESTRRL DEGEKENDAA EQEEEEERTM  240
GSAQEQGLVD EGDEMAAREL KDYLLEIQRQ IDSSFTRQLQ EPNNANITPQ PSRVNSTRTS  300
GQDSASESRV RPHLPTPEPL NVSPLKKKRA NPAARRIKKF WTPEEEAVLR EGVKEYGKSW  360
KEIKNANPEV FAERTEVDLK DKWRNLVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583765.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS849683e-68S84968.1 Bcg4-4=acyl carrier protein [Brassica rapa, Genomic, 3898 nt].
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583765.10.0PREDICTED: uncharacterized protein LOC106292672 isoform X2
TrEMBLA0A0D3CMP60.0A0A0D3CMP6_BRAOL; Uncharacterized protein
STRINGBo5g146770.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-144MYB_related family protein