PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583601.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 391aa    MW: 44554.5 Da    PI: 8.5408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.6e-1024116399
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     k l+p  + ks ++ ++p + ++++   k+ +  ++++ ++++sW++ l  ++ ++  +++++ W eFv++n L + D++ F+++g++ f   v+
  XP_013583601.1  24 KSLSPGQNWKSkSMRIIPEEILRSIP--KAFEHRVVFTVPWNNSWQLWL--QGDKNClFMIKEDWDEFVDDNLLASDDTLHFTHQGTMYF--QVR 112
                     55555555555245588999999885..446668***************..44444459************************9998888..899 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_013583601.1 113 IFKK 116
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-1414118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-1416117IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-1122117IPR003340B3 DNA binding domain
PROSITE profilePS508639.79823117IPR003340B3 DNA binding domain
PfamPF023621.5E-734116IPR003340B3 DNA binding domain
CDDcd100174.31E-834115No hitNo description
SuperFamilySSF1019361.79E-9162247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-7162257IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0038169264IPR003340B3 DNA binding domain
PROSITE profilePS508637.246226264IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-7290375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-6291375IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0018297387IPR003340B3 DNA binding domain
PROSITE profilePS508636.724354391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MKRKKLPERE EVHETQSKKS SFSKSLSPGQ NWKSKSMRII PEEILRSIPK AFEHRVVFTV  60
PWNNSWQLWL QGDKNCLFMI KEDWDEFVDD NLLASDDTLH FTHQGTMYFQ VRIFKKDGKE  120
IISAPLEVEP PHNSHQETTP ASASGGGRKS FAHVENPERY LFNPSNPYFE KTLTKTNTAL  180
YVSTPVVKKY ELEFGPRNSS MHFLLPDGNK MEGFNKIYSG LHAFLGWADV CQKYNLKQGD  240
TVVCEFELSG RVVTAVRVHF VTASNSASGR QTSRGRQSFD HVENPERYLL NPNNPYFEKT  300
LTKTNSVLHV SPPVIKKYGL EFGPHSSSMD FLLPDGSKME GFTKSYCGLY GFLGWAAVCQ  360
KYNLKPGDTV VCEFELSRGV VSAVRVHFVN E
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583600.10.0PREDICTED: B3 domain-containing protein At5g25470-like isoform X1
RefseqXP_013583601.10.0PREDICTED: B3 domain-containing protein At5g25470-like isoform X2
SwissprotQ680D91e-94Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A0D3CJ470.0A0A0D3CJ47_BRAOL; Uncharacterized protein
STRINGBo5g121410.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.33e-93B3 family protein