PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013583243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 359aa MW: 41031.8 Da PI: 8.9536 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70 | 2.2e-22 | 23 | 69 | 5 | 51 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +s + ++++kR+ +++KKA ELS+LC++ev+vi+++s+g+l+++++ XP_013583243.1 23 TSSLKATSLAKRQVTVFKKARELSILCGIEVCVIYYGSDGELKTWPK 69 578899***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-5 | 14 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-17 | 24 | 102 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.88E-17 | 27 | 91 | No hit | No description |
PROSITE profile | PS50066 | 11.886 | 27 | 71 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-13 | 28 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MASSSSFLPS SSSLVRQNHF QKTSSLKATS LAKRQVTVFK KARELSILCG IEVCVIYYGS 60 DGELKTWPKD REKVKDMARR YSQLSDMKRR KGQDDLDKFL KKINKEDSKK KKVKVESSCK 120 YLDWDPRFDN CSVEQLTELI QSLEHSETKL QHRLRGAVES QRQRNMYYTT MAGQEQMNHL 180 QQHSDQVSMD QYNHGTGTLP QLAVSTSAFN QSQSLAPLPN SLTIHHNPNM ESYSRLLGVQ 240 ETGMNELLSM NMLPYNNINT NNVNVFPNQF HQNSYNMEDY SGFLGGINNV SSEDYSGLLW 300 TQGTGISGLQ NMDMFGYNNN NNNNNNAYGF SNQLVQYQGQ RTPPGFQYMD RSTQNIRPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013583243.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013583243.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q9LSB2 | 1e-101 | AG103_ARATH; Agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A0D3CIT2 | 0.0 | A0A0D3CIT2_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g117290.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 2e-89 | AGAMOUS-like 103 |
Publications ? help Back to Top | |||
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