PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00158450001

Common Name

GSBRNA2T00158450001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 1242aa MW: 137168 Da PI: 7.1459

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00158450001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.5	1.7e-15	301	339	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++C e+C+C dC Nk GSBRNA2T00158450001 301 ACKRCHCKKSKCLKLYCECFAAGVYCLESCSCVDCYNKP 339 589**********************************96 PP
2	TCR	48.5	1.7e-15	387	426	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+C+kkYCeC+++g+ Cs +C+Ce+CkN GSBRNA2T00158450001 387 RHKRGCNCRKSNCVKKYCECYQSGVGCSINCRCEGCKNAF 426 589***********************************75 PP
3	TCR	49.9	6.1e-16	953	991	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk GSBRNA2T00158450001 953 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP 991 689**********************************96 PP
4	TCR	51.1	2.6e-16	1039	1077	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN GSBRNA2T00158450001 1039 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 1077 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.3E-16	300	341	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.335	301	427	IPR005172	CRC domain
Pfam	PF03638	2.1E-11	303	338	IPR005172	CRC domain
SMART	SM01114	3.3E-16	387	428	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.8E-11	389	425	IPR005172	CRC domain
SMART	SM01114	2.4E-19	952	993	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.394	953	1079	IPR005172	CRC domain
Pfam	PF03638	1.5E-11	955	990	IPR005172	CRC domain
SMART	SM01114	4.2E-17	1039	1080	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.3E-11	1041	1077	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1242 aa Download sequence Send to blast
METPQKTIIQ NGTPVSKLKN SPVFNYINNL SPIKPVRLIP IAQTFGSLSP SVYTPPHKGS 60 RFKSHTYFSD PSKELVEEAL LETIPPEILK NDCISTPPRR AAANDGSCGD GETDLQRMCD 120 GNVKRKSDTP DWETQFPDTP EMLIYDTLND SEADRCFLPA SSDSKRRSCG GTKPRLEPVS 180 NSKELADSLH RGVRRRLLDF EMPYKQTSEK SSSSCVVPPS TVLHLNAFAM SFKDINVGNE 240 YSLSGNIKAG LQKFENETGE AAGQSVVEEV QKSSLALVEM NQSSPKKKRL KSGQAGEGES 300 ACKRCHCKKS KCLKLYCECF AAGVYCLESC SCVDCYNKPI HEDIVLATRK QIESRNPIAF 360 APKVIRNTDS SIMEAGVDAS KTPASVRHKR GCNCRKSNCV KKYCECYQSG VGCSINCRCE 420 GCKNAFGKKD VSSFVGMDIK QDDVSETWKT QQNNELVRYV PLPPSTPMLL RQPLAQLPIS 480 SNNMLLPQQS QHLHGASGSS LYESQSFRKQ GTSLLSHSRT EKIIEDIENL IQSPITNINA 540 VSPNSKRVSL PHLDSPELTP RRRNAAWKMD NENSQKEPAS KIETPTPKSK FEDSPVFNFI 600 NNLSPFEPVK SFSSAQTFSS LSFTSPPPVF ASPHPNFHRE SRFFRCQHSV DRSKALGDGS 660 VSKEDREVDL NKDATLEDDE EEDTETSCEL PQILSSDGQS PPHHGEDIVT QTLLPPSDPP 720 LGEDNNGSSM NRLQKIPDSQ EEENGTPDSR RLMADAAAEL LVFRSPNDSE AFTCLVDKIS 780 SSERRFFAGV KHHDIIPANG SSNDNEPLAV VPNQLVSNVH CGSMRRRCLD FEVPGKRKKD 840 DDQQTVCDNN KPESSSSKCV VPGIGLHLNA IAMASSNTKI SITHEYSSSE EVQNTFSGSI 900 TPVHSQDTVP ETLDQAESQP GEEAPKALVF EELIPDSFQK KKQVLEGGEG ESSCKRCNCK 960 KSKCLKLYCE CFAAGVYCIE PCSCVDCFNK PIHEDTVLAT RKQIESRNPL AFAPKVIRNS 1020 DSSIMDTSDD ASKTPASARH KRGCNCKKSN CLKKYCECYQ SGVGCSINCR CEGCKNAFGR 1080 KDAYLHTIME SKQEDDHETY EKRTEKIQQN SKEVEQNPQP STPLPPYRNL VVHQPFLSRN 1140 KLPPTQFFLG AGSSSFRKPD CDVTQSMNEK KSLETVTEDK TEIMPDILNT SPIKANSPNS 1200 KRVSPAHIGP SEPGSILGKR SNGRKLILRS IPAFPSLNPN Q*

Sequence ? help Back to Top

Protein Sequence Length: 1242 aa Download sequence Send to blast

METPQKTIIQ NGTPVSKLKN SPVFNYINNL SPIKPVRLIP IAQTFGSLSP SVYTPPHKGS  60
RFKSHTYFSD PSKELVEEAL LETIPPEILK NDCISTPPRR AAANDGSCGD GETDLQRMCD  120
GNVKRKSDTP DWETQFPDTP EMLIYDTLND SEADRCFLPA SSDSKRRSCG GTKPRLEPVS  180
NSKELADSLH RGVRRRLLDF EMPYKQTSEK SSSSCVVPPS TVLHLNAFAM SFKDINVGNE  240
YSLSGNIKAG LQKFENETGE AAGQSVVEEV QKSSLALVEM NQSSPKKKRL KSGQAGEGES  300
ACKRCHCKKS KCLKLYCECF AAGVYCLESC SCVDCYNKPI HEDIVLATRK QIESRNPIAF  360
APKVIRNTDS SIMEAGVDAS KTPASVRHKR GCNCRKSNCV KKYCECYQSG VGCSINCRCE  420
GCKNAFGKKD VSSFVGMDIK QDDVSETWKT QQNNELVRYV PLPPSTPMLL RQPLAQLPIS  480
SNNMLLPQQS QHLHGASGSS LYESQSFRKQ GTSLLSHSRT EKIIEDIENL IQSPITNINA  540
VSPNSKRVSL PHLDSPELTP RRRNAAWKMD NENSQKEPAS KIETPTPKSK FEDSPVFNFI  600
NNLSPFEPVK SFSSAQTFSS LSFTSPPPVF ASPHPNFHRE SRFFRCQHSV DRSKALGDGS  660
VSKEDREVDL NKDATLEDDE EEDTETSCEL PQILSSDGQS PPHHGEDIVT QTLLPPSDPP  720
LGEDNNGSSM NRLQKIPDSQ EEENGTPDSR RLMADAAAEL LVFRSPNDSE AFTCLVDKIS  780
SSERRFFAGV KHHDIIPANG SSNDNEPLAV VPNQLVSNVH CGSMRRRCLD FEVPGKRKKD  840
DDQQTVCDNN KPESSSSKCV VPGIGLHLNA IAMASSNTKI SITHEYSSSE EVQNTFSGSI  900
TPVHSQDTVP ETLDQAESQP GEEAPKALVF EELIPDSFQK KKQVLEGGEG ESSCKRCNCK  960
KSKCLKLYCE CFAAGVYCIE PCSCVDCFNK PIHEDTVLAT RKQIESRNPL AFAPKVIRNS  1020
DSSIMDTSDD ASKTPASARH KRGCNCKKSN CLKKYCECYQ SGVGCSINCR CEGCKNAFGR  1080
KDAYLHTIME SKQEDDHETY EKRTEKIQQN SKEVEQNPQP STPLPPYRNL VVHQPFLSRN  1140
KLPPTQFFLG AGSSSFRKPD CDVTQSMNEK KSLETVTEDK TEIMPDILNT SPIKANSPNS  1200
KRVSPAHIGP SEPGSILGKR SNGRKLILRS IPAFPSLNPN Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	305	1076	14	120	Protein lin-54 homolog
5fd3_B	1e-16	305	1076	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	824	838	RRRCLDFEVPGKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269\|PubMed:18057042}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00158450001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013719668.1	0.0	CRC domain-containing protein TSO1-like isoform X1
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A3P6AAR7	0.0	A0A3P6AAR7_BRACM; Uncharacterized protein
STRING	Bra001884.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]