PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00158101001 | ||||||||
Common Name | GSBRNA2T00158101001, LOC106407720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28438.3 Da PI: 9.6816 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 90 | 136 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r h + Er RR++ +++++ L++llP K +K +i+ekAv+ I++L+ GSBRNA2T00158101001 90 RRHMMKERTRREKQKQSYFALQSLLPAT------KSDKNSIVEKAVDQIRKLE 136 5699***********************9......788888**********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.68E-12 | 84 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.14E-9 | 85 | 140 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-9 | 86 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.906 | 87 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-7 | 90 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-8 | 93 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDFFSLDSVF QEEGENFWDM IAGDVSGDGD GDKTVGVPNR SAFRSYVRDH EQRMVSSSST 60 VNVKRRMVNL LRKNWEEKKI VAVPEKERSR RHMMKERTRR EKQKQSYFAL QSLLPATKSD 120 KNSIVEKAVD QIRKLEGLKK ELERQKNVLE AKSAREHDGM NGTKVRFNVQ EPLSGIDSVV 180 EVLQCLKSMG TNLNAVQANF SPHEFSATMN IETQIRGEEV EKRVQKRLQE TEWKLLFLPE 240 ASFLRD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00158101001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189402 | 0.0 | AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence. | |||
GenBank | AC189591 | 0.0 | AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013704047.1 | 0.0 | transcription factor bHLH92 | ||||
Swissprot | Q9FIX5 | 1e-116 | BH092_ARATH; Transcription factor bHLH92 | ||||
TrEMBL | A0A3P6EN39 | 0.0 | A0A3P6EN39_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g065640.1 | 1e-156 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9602 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 1e-118 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106407720 |
Publications ? help Back to Top | |||
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