PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157580001
Common NameGSBRNA2T00157580001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 596aa    MW: 66585.8 Da    PI: 8.6207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157580001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000256183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC +C++ F ++ n++rH r+H
  GSBRNA2T00157580001 61 HKCDKCTREFCSPVNFRRHKRMH 83
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3466188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLTFHR PENSPVQLFQ LLNTLERPGW PLLAPLKIQL  60
HKCDKCTREF CSPVNFRRHK RMHRRSTKPE KYSAKEKDAL GAFWDELSVF DAKEILSLKN  120
MMLENVRGES VESGLISLIE NPGYTALPQY YLRAGSDLLD IIQGRPLKFP IYSNQLFSIL  180
DDASEKTFMS NEAASMQKYI FDGENGKNVL EAKNVVACAS FLLEQQLIKA WLADKDAEAL  240
RCQNLLVEEE EAAQRSRQAE LLERKKRKKL RQKEQRVKDQ TKDAKEDEST TSDEQQQSPA  300
ESSRPLSVAS DTEAQRSDSI PTENSSSLEE PQVLEIDNER NGETQAPTVD GAGFGNGQNM  360
ERRSGRREME RSQYGMPNGF RGNHAPKLGG MRKNGTNRDT RANTTKVWSR KADNPKSISP  420
DAVVAEPEQT KNSEVLIGSV SVTIGNSCLS GEHNQAKCSS EEEGRIKAVE AKPTSEQSTV  480
EVSRPVSSQG RKVSTANGNT DKKDKHLSST QPEVKTANHI SLQFNNHEAK AFLAKRWKEA  540
ISAEHVTLVL SQETDMPGNN THESSNGVIT AARPKHRMKP EKGAKVKYVA KQKIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262269ERKKRKKL
2264268KKRKK
3267277KKLRQKEQRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157580001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599780.10.0PREDICTED: neurofilament medium polypeptide-like
RefseqXP_013599788.10.0PREDICTED: neurofilament medium polypeptide-like
RefseqXP_022550487.10.0neurofilament medium polypeptide-like
TrEMBLM4DBP30.0M4DBP3_BRARP; Uncharacterized protein
STRINGBra013903.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]