PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157480001
Common NameGSBRNA2T00157480001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HRT-like
Protein Properties Length: 374aa    MW: 41720.1 Da    PI: 9.4459
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157480001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like51.41.8e-16179209131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          +CGv+ edG++C + P+ gRKRC +HKG+Ri
  GSBRNA2T00157480001 179 VCGVLQEDGTTCLTAPATGRKRCTQHKGQRI 209
                          7*****************************7 PP
2HRT-like45.11.7e-14227257131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCGvil     C+ +Pv gRKRCe HKGmR+
  GSBRNA2T00157480001 227 ICGVILPEMVRCRSKPVSGRKRCEDHKGMRV 257
                          8*****************************7 PP
3HRT-like27.65e-09298324228
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                          C +++++G +C+r++ kg  RC++HK+
  GSBRNA2T00157480001 298 CEATTKNGLPCTRSAPKGTRRCWQHKD 324
                          99************************7 PP
4HRT-like59.36.1e-19341371131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          +CGv+l  GsvC+++PvkgRKRC+eHKGmRi
  GSBRNA2T00157480001 341 VCGVKLYTGSVCEKPPVKGRKRCQEHKGMRI 371
                          7*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MYKRDDYVRN KPDGVFSKWQ GFARSMLLPK PFSETAELRR TVADYSLISR DLAPKILTGA  60
KGNREDLRVG KDFVGRYRVQ ESIQGLGVAV NIHDADDISH GQTESIRTRL RSYGRPVPLL  120
KKLGDNASQT ITQKKTGSRS NDKKHGFEEE RDVSRVEAEE NNTNSRHDDI VDGSDSASVC  180
GVLQEDGTTC LTAPATGRKR CTQHKGQRIT CAPPVKKPPC EEETEEICGV ILPEMVRCRS  240
KPVSGRKRCE DHKGMRVNAF FFLLNPTERD KILKEDKSKP ETRTSSTNQE EPGQSLSCEA  300
TTKNGLPCTR SAPKGTRRCW QHKDEALDHK SSENVKSTTV VCGVKLYTGS VCEKPPVKGR  360
KRCQEHKGMR ITS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269|PubMed:16244914}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157480001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5335060.0AY533506.1 Brassica napus effector of transcription mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625967.10.0PREDICTED: uncharacterized protein LOC106332051
RefseqXP_013697991.20.0protein EFFECTOR OF TRANSCRIPTION
SwissprotA2RQG70.0ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBLA0A3N6QBK70.0A0A3N6QBK7_BRACR; Uncharacterized protein
STRINGBra026458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.11e-113
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]