PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00157398001
Common NameGSBRNA2T00157398001, WRKY20-1
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 533aa    MW: 58661.4 Da    PI: 7.1841
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00157398001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31196253260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers  d+++++i+Y+g+H+h+k
  GSBRNA2T00157398001 196 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGQITDIIYKGTHDHPK 253
                          8****************************************.***************85 PP
2WRKY107.27.9e-34353411159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSBRNA2T00157398001 353 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 411
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.388190254IPR003657WRKY domain
SuperFamilySSF1182908.11E-25193254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-27193254IPR003657WRKY domain
SMARTSM007742.2E-32195253IPR003657WRKY domain
PfamPF031061.0E-23196252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37338413IPR003657WRKY domain
SuperFamilySSF1182901.57E-29345413IPR003657WRKY domain
PROSITE profilePS5081138.629348413IPR003657WRKY domain
SMARTSM007743.1E-39353412IPR003657WRKY domain
PfamPF031064.2E-26354411IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MNPQVDNDRK EFPVDPTASR GGGNGGGGAR YKLMSPAKLP ISRSTDITIP PGLSPTSFLE  60
SPVFISNIKP EPSPTTGSLF KPRPVHVSSS SYTGRPFHQD STFPEQNSSE FEFRPPASTM  120
VYAELDKHRS EPAVQFQGQG YGSSHSPSSI SEAAANSSEL RRPTQSSDIP AGSEVDESVQ  180
ASQNDPRGSA PAVLADDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK LFERSYDGQI  240
TDIIYKGTHD HPKPQPGRRN SCSLGMSAQE ERVEKGVYNL AQAIEQAGNP EVPLTPEDGG  300
EVAVSNKSKD DQDEDDPYTK RRRLDGTMEI TPLVKPIREP RVVVQTLSEV DILDDGYRWR  360
KYGQKVVRGN PNPRSYYKCT APGCPVRKHV ERASHDPKAV ITTYEGKHNH DVPTSKSSSN  420
HHDNQPRFRP GETDTVSLNL GVGISSDGLD HTSNERQHQN QQQLINQTHP NGVGFRFVHA  480
APIASYYASL NGGLNQYAPR ETQNETQNGD ISSLNHSSYP YPQNIGRIQS GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38194413877Probable WRKY transcription factor 4
2lex_A7e-38194413877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319323KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.71580.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00157398001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123930.0EU912393.1 Brassica napus WRKY20-1 transcription factor (WRKY20-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022549562.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLC4N0V80.0C4N0V8_BRANA; WRKY20-1 transcription factor
STRINGBo1g046510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Yang B,Jiang Y,Rahman MH,Deyholos MK,Kav NN
    Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments.
    BMC Plant Biol., 2009. 9: p. 68
    [PMID:19493335]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]