PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00157168001 | ||||||||
Common Name | GSBRNA2T00157168001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 35981.6 Da PI: 6.6843 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.8 | 1.1e-28 | 153 | 213 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqK++ g++fprsYYrCt++ +C+++k+v+rs++d +v+e+tY+g+H+++ GSBRNA2T00157168001 153 DDVYSWRKYGQKDILGAKFPRSYYRCTHRstqNCWATKQVQRSDSDSTVFEVTYRGTHTCS 213 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 7.19E-25 | 150 | 213 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-27 | 150 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-37 | 152 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.781 | 153 | 210 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-26 | 153 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEGKKDMLNW EQKTLVSELI SGLEAAKKLQ ARLGEPSSLP PSSSSRAAEM NEILMKQILS 60 SYEKSLAIVN WSSAPPVQLI LKAGSIAPVT LIPESPVSIN GSPRSEDFLD GRGSSNTHRQ 120 NHLFNSKKRK MLPKWTEKVR MSPERGLEGP HQDDVYSWRK YGQKDILGAK FPRSYYRCTH 180 RSTQNCWATK QVQRSDSDST VFEVTYRGTH TCSRATAAAP PPPASPEKQD TITKPPIAQK 240 PNDLLESLKT SLTVRTEGLD EGEDVFSLFP NTPPFYDYGT PNDYFGGLME SSPIFDVVDW 300 FNPTVEINPE FPTFLPDSIY Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-19 | 152 | 216 | 16 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-19 | 152 | 216 | 16 | 80 | Disease resistance protein RRS1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25633 | 1e-138 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00157168001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430061 | 0.0 | KF430061.1 Brassica rapa WRKY transcription factor 53 (WRKY53) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597887.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 1e-153 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A0D3DFR5 | 0.0 | A0A0D3DFR5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g109140.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-152 | WRKY family protein |