PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00157028001 | ||||||||
Common Name | GSBRNA2T00157028001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 131aa MW: 14741 Da PI: 8.2113 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 76.4 | 5.1e-24 | 39 | 124 | 14 | 98 |
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++Cv+apyfp+++p kf vhk+FG++nv k+l++l ++ + e a+++l+yeAear++dP++G vg + +++ l++lk e++++ GSBRNA2T00157028001 39 NSCVMAPYFPSKEPDKFDRVHKVFGVENVYKILSRLeEPWQSEYAVNALCYEAEARIHDPIHGYVGPQMIYNNILNNLKREIDSAI 124 68**********************************55556899***********************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.69 | 25 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-23 | 39 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MSSLKIKGKP KKKKNGFTNL CCMQLHEQHN GPCTLGSGNS CVMAPYFPSK EPDKFDRVHK 60 VFGVENVYKI LSRLEEPWQS EYAVNALCYE AEARIHDPIH GYVGPQMIYN NILNNLKREI 120 DSAINELAIS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-24 | 41 | 127 | 26 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-24 | 41 | 127 | 26 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00157028001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013595095.1 | 7e-62 | PREDICTED: LOB domain-containing protein 32-like | ||||
Swissprot | Q9FFL3 | 2e-23 | LBD35_ARATH; LOB domain-containing protein 35 | ||||
TrEMBL | A0A0D3DFG5 | 6e-90 | A0A0D3DFG5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g108130.1 | 1e-90 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 1e-25 | LOB domain-containing protein 35 |
Publications ? help Back to Top | |||
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