PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00157025001 | ||||||||
Common Name | GSBRNA2T00157025001, LOC106442632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 22305.9 Da PI: 4.2886 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 69.7 | 6.5e-22 | 6 | 107 | 2 | 97 |
DUF260 2 CaaCkvlrr.kCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqq 85 C aC + + C+ + Cv+apyfp+++p kf vh +FG++nv+k+l++l ++ +re a+++l+yeAear++dP++ + + +++ GSBRNA2T00157025001 6 CVACNFTDNgPCTlgngNACVMAPYFPSTEPDKFDRVHIVFGVENVCKILSRLeEPWQREYAANALCYEAEARIHDPIHDYLVPQMVYNN 95 9999998876897444467**********************************55667*********************99999999999 PP DUF260 86 qleqlkaelall 97 l++lk e++++ GSBRNA2T00157025001 96 ILNNLKREIDSA 107 999999988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 6.9E-21 | 6 | 106 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 14.651 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDLPNCVACN FTDNGPCTLG NGNACVMAPY FPSTEPDKFD RVHIVFGVEN VCKILSRLEE 60 PWQREYAANA LCYEAEARIH DPIHDYLVPQ MVYNNILNNL KREIDSAINE LSITMAKVPQ 120 YSNLPIPSDF TKPSLFALIN EMLELNEDQK NQLRGLPDVD ARRNVDEIVG MRENDQGDVH 180 GADGASTSSG PSSGPPNQNQ P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-20 | 6 | 111 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-20 | 6 | 111 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00157025001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013739748.1 | 1e-149 | LOB domain-containing protein 32 | ||||
TrEMBL | A0A0D3DFG2 | 1e-132 | A0A0D3DFG2_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g108100.1 | 1e-132 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 2e-36 | LOB domain-containing protein 35 |
Link Out ? help Back to Top | |
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Entrez Gene | 106442632 |
Publications ? help Back to Top | |||
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