PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156405001
Common NameGSBRNA2T00156405001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31376.3 Da    PI: 8.6392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156405001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.53.6e-132268549
                         SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEE CS
               SRF-TF  5 nksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl.yey 49
                         n+++ + +f   R ++ilKKA ELS+LCd +++vi +  +g+l  +y
  GSBRNA2T00156405001 22 NQTRFKKSFlLLREKTILKKALELSILCDNDICVIHYDREGNLvNTY 68
                         4444444431349************************9999872456 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0042970IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-1320105IPR002100Transcription factor, MADS-box
PfamPF003191.8E-73464IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.4613471IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDSLSSSTST RMKNNNKLSV RNQTRFKKSF LLLREKTILK KALELSILCD NDICVIHYDR  60
EGNLVNTYPE DQCQVKHIVE RYRNLRDGEK IKKNTNLSQF YNKKLVDEKR RSLTDAEERK  120
RFTKKVGEFK SSLEHKLQIV KDRVRDLLYS QDHQTEPDQS TCLDDPLMNF CPQVINNPVS  180
VHQQQIGSSL TNLLMSGDAS GSSNDRSKFS IFLFNHETAT FTPLPNSVSS SFDQGLTPCS  240
NNLITASHGA QGFNFGCSNN LNTQGFNFGC NNNLCT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156405001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147930.20.0PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLM4DQH40.0M4DQH4_BRARP; Uncharacterized protein
STRINGBra018767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.12e-41AGAMOUS-like 53
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]