PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155564001
Common NameGSBRNA2T00155564001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 601aa    MW: 67075.3 Da    PI: 10.2223
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155564001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.4e-114188245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwq 45
                         + W t+E++ll +avk++G+++W+++a+++     ++ ++ +c++ + 
  GSBRNA2T00155564001 41 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVAsrssLNASAHDCRLEYE 88
                         68*****************************************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.06E-53791IPR009057Homeodomain-like
PROSITE profilePS512939.0513895IPR017884SANT domain
SMARTSM007171.1E-53993IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-44075IPR009057Homeodomain-like
PfamPF002493.9E-104190IPR001005SANT/Myb domain
CDDcd001671.43E-54385No hitNo description
SMARTSM002978.7E-17268377IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.4E-16270389IPR001487Bromodomain
SuperFamilySSF473707.2E-16271375IPR001487Bromodomain
CDDcd043693.03E-13275372No hitNo description
PfamPF004396.5E-10281362IPR001487Bromodomain
PROSITE profilePS5001412.237287358IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MTREEDTAVT SNGMNDEYAN NINSCSASDN NRNGDANQIS QVWGTWEELL LTCAVKRHGS  60
KDWDSVAKEV ASRSSLNASA HDCRLEYEDL KRRFDDDDDG RGNTDDRDGE IVERLRSLRV  120
AELRREVQRR DESILSLQLK VKKLEEENDG DDKPDLEAVR SLNNETEPVR LNRGTTESDH  180
RSMNESNSTA SVDKIADHEQ LDHSRNPDPA HKAAEEEGEA TVSRRSGMSH SGELGESGTS  240
TGTRKRTRRG QKYMSGEDSS IRGGSGGNIK TAGNKSQPLV EIIKLIRSHP RGSVFDSRLR  300
SQETKNYKGL IRQHLDIKTI EKKMEKGSYV SSSLSFYRDL KLFFTNAIVF FPTSSSEYMA  360
AQELKTLVST EMKKKNGTSI HSVIKTDALS LVSRQKPSAP PLVACEKKSS ALTKTLPSSR  420
LKQKDEKKTR EVSEEKTLTT AARSSRRTSN GIEVVAKNTK MGRAKNNKKQ KTDSSSDDDD  480
DGDKEETPKT EKKRAVAASE KKKSVAEFLK RIKTNSPQKV KETTSKDQKK SAGNVKKQNS  540
KAKPRELRSN STGKKKVDVE NNSNKSSSKR KQSKKEAEEV TDAGRESGKD NQQPKKRNRR  600
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1593599PKKRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155564001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708497.10.0uncharacterized protein LOC106412149
TrEMBLA0A0D3DUI50.0A0A0D3DUI5_BRAOL; Uncharacterized protein
STRINGBo8g094870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]