PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155536001
Common NameGSBRNA2T00155536001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 286aa    MW: 31398.4 Da    PI: 9.01
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155536001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-19132186256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  GSBRNA2T00155536001 132 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 186
                          788899***********************************************98 PP
2HD-ZIP_I/II123.11.3e-39132221191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  GSBRNA2T00155536001 132 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR-A 220
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  GSBRNA2T00155536001 221 L 221
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.4E-351105IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.5E-19111186IPR009057Homeodomain-like
SuperFamilySSF466894.28E-19112189IPR009057Homeodomain-like
PROSITE profilePS5007117.313128188IPR001356Homeobox domain
SMARTSM003892.6E-15130192IPR001356Homeobox domain
CDDcd000866.00E-14132189No hitNo description
PfamPF000463.4E-16132186IPR001356Homeobox domain
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PfamPF021835.0E-11188222IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-26188231IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGERDDGLGL SLSLSLGLNQ KESTPRLNPT PMASYSSSSH MHMQNSWIQM FQSSERNSDV  60
GSFLRGLDVN RAPSRVVVDV EEDAGVSSPN STVSSVMSGK RNERELAERG SSSLGGGSDD  120
EDGGGNGDDG SRKKLRLSKE QALVLEETFK EHSTLNPKQK MALAKQLNLR TRQVEVWFQN  180
RRARTKLKQT EVDCEYLKRC CENLTEENRR LQKEVSELRA LKLSPQLYMH MKPPTTLTMC  240
PSCERVAVAS SSVAPAPVMS SSSPMGPMSP WAAIPLRQRP AAGSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136SRKKLRL
2180188RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155536001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469193.11e-162PREDICTED: homeobox-leucine zipper protein HAT3
SwissprotP466021e-158HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A3N6TB841e-160A0A3N6TB84_BRACR; Uncharacterized protein
TrEMBLD7LRP71e-160D7LRP7_ARALL; Uncharacterized protein
STRINGBostr.13158s0030.1.p1e-166(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-115homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]