PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00154828001

Common Name

GSBRNA2T00154828001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 1217aa MW: 133796 Da PI: 7.621

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00154828001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.4	1.9e-15	294	332	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfa+g++C +C+C dC+Nk GSBRNA2T00154828001 294 SCKRCHCKKSKCLKLYCECFASGVYCIVSCSCVDCFNKP 332 689**********************************96 PP
2	TCR	49.1	1.1e-15	380	419	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+C+kkYCeC+++g+ Cs +C+Ce+CkN GSBRNA2T00154828001 380 RHKRGCNCKKSNCVKKYCECYQSGVGCSINCRCEGCKNAF 419 589***********************************75 PP
3	TCR	50	5.9e-16	932	970	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C + C+C dC+Nk GSBRNA2T00154828001 932 SCKRCNCKKSKCLKLYCECFAAGVYCIDPCSCVDCFNKP 970 689**********************************96 PP
4	TCR	51.1	2.6e-16	1017	1055	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN GSBRNA2T00154828001 1017 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 1055 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.7E-18	293	334	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.278	294	420	IPR005172	CRC domain
Pfam	PF03638	4.4E-11	296	331	IPR005172	CRC domain
SMART	SM01114	2.8E-16	380	421	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.3E-11	382	418	IPR005172	CRC domain
SMART	SM01114	1.4E-19	931	972	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.692	932	1057	IPR005172	CRC domain
Pfam	PF03638	1.2E-11	934	969	IPR005172	CRC domain
SMART	SM01114	4.2E-17	1017	1058	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.3E-11	1019	1055	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1217 aa Download sequence Send to blast
MQNSPVFNYI NNLSPIKPVR SIPIAQTFGS LSPSVYTPPH KGSRFKSHTY FSDPAKELVE 60 EALLETVPPK ILKNNCISTP PRRAAANDGS CGNGKTDLQK MCDGNVKRKS DTPDWETQFP 120 DTPEMLIYDT LNDSEADRCF LPASSDLKRR SCGGTKPRLE PVSNSKELAD ALHRGVRRRL 180 LDFEMPDNQT SEKSSSSCVV PPSTGLHLNT AFAMSSKDTN EYSLSANIKV GLQNSTPPVL 240 HSHDILRENE TGEAAGQSVV EEIQKSSLAL VEMNQSSPKK KRLKSDQAGE GESSCKRCHC 300 KKSKCLKLYC ECFASGVYCI VSCSCVDCFN KPIHEDTVLA TRKQIESRNP IAFAPKVIRN 360 TDSSIMEAGV DASKTPASVR HKRGCNCKKS NCVKKYCECY QSGVGCSINC RCEGCKNAFG 420 KKDVSSFVGM DIKQDGESKT GQTQQNNELF SYVPLPPSTP MSLRQPLAQL PISSNNMLLP 480 QQSQQLHGAS GSFLYENQSF RKQGMGLLSR TETITEDIEN VIPSPITNIN TVSPNSKRVS 540 LPHLDPPVLT PRRRNAAWKM DNKMKNQSSA SQIETPTPKS KFEDSPVFNF INNLSPFEPV 600 KSFSSVQTFS SLSFTSPPPV FTSPHPTFHR ESRFFRCQNS VDRSKALESV SKEVDLNKDA 660 TLEDEEEDTE TSCELPQILN SDSQSPPHHG EDIVTQVLLP PSDPTPGGGN DSSSGDVKLR 720 LQEILDAQEE SGTPGSRRLM ADAAELLVFR SPNDSEAFTC LVDKISSSER RFFAGVKLPT 780 QQHDNEPLAA VPNQPISNMH RGSMRRRCLD FEVPGKRKKD DDQQTVSDNN KAESSSSTCV 840 VPGIGLHLNA IAMASRNTKI SITHEYSSSG EIQITPVPSQ DTVPEALEQA ESQPREASAV 900 EEAPKALVLE ELIPDSLQKT KQVLEGGEGE SSCKRCNCKK SKCLKLYCEC FAAGVYCIDP 960 CSCVDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRNSD SIMDTSDDAS KTPASARHKR 1020 GCNCKKSNCL KKYCECYQSG VGCSINCRCE GCKNAFGRKD AYLHAIMESK QEEDHETYEK 1080 RTADMSKEAE RNPSSEQPLT PLPPYKHLVV HQPFLPRNKL PPTQFSLGAG SSSFRKPEGE 1140 SGNEKKPLET VIEDKTEIMP DILNTSPIKA NSPNSKRVSP AHIGSSEPGS ILGKRSNGRK 1200 LILRSIPAFP SLNHNQ*

Sequence ? help Back to Top

Protein Sequence Length: 1217 aa Download sequence Send to blast

MQNSPVFNYI NNLSPIKPVR SIPIAQTFGS LSPSVYTPPH KGSRFKSHTY FSDPAKELVE  60
EALLETVPPK ILKNNCISTP PRRAAANDGS CGNGKTDLQK MCDGNVKRKS DTPDWETQFP  120
DTPEMLIYDT LNDSEADRCF LPASSDLKRR SCGGTKPRLE PVSNSKELAD ALHRGVRRRL  180
LDFEMPDNQT SEKSSSSCVV PPSTGLHLNT AFAMSSKDTN EYSLSANIKV GLQNSTPPVL  240
HSHDILRENE TGEAAGQSVV EEIQKSSLAL VEMNQSSPKK KRLKSDQAGE GESSCKRCHC  300
KKSKCLKLYC ECFASGVYCI VSCSCVDCFN KPIHEDTVLA TRKQIESRNP IAFAPKVIRN  360
TDSSIMEAGV DASKTPASVR HKRGCNCKKS NCVKKYCECY QSGVGCSINC RCEGCKNAFG  420
KKDVSSFVGM DIKQDGESKT GQTQQNNELF SYVPLPPSTP MSLRQPLAQL PISSNNMLLP  480
QQSQQLHGAS GSFLYENQSF RKQGMGLLSR TETITEDIEN VIPSPITNIN TVSPNSKRVS  540
LPHLDPPVLT PRRRNAAWKM DNKMKNQSSA SQIETPTPKS KFEDSPVFNF INNLSPFEPV  600
KSFSSVQTFS SLSFTSPPPV FTSPHPTFHR ESRFFRCQNS VDRSKALESV SKEVDLNKDA  660
TLEDEEEDTE TSCELPQILN SDSQSPPHHG EDIVTQVLLP PSDPTPGGGN DSSSGDVKLR  720
LQEILDAQEE SGTPGSRRLM ADAAELLVFR SPNDSEAFTC LVDKISSSER RFFAGVKLPT  780
QQHDNEPLAA VPNQPISNMH RGSMRRRCLD FEVPGKRKKD DDQQTVSDNN KAESSSSTCV  840
VPGIGLHLNA IAMASRNTKI SITHEYSSSG EIQITPVPSQ DTVPEALEQA ESQPREASAV  900
EEAPKALVLE ELIPDSLQKT KQVLEGGEGE SSCKRCNCKK SKCLKLYCEC FAAGVYCIDP  960
CSCVDCFNKP IHEDTVLATR KQIESRNPLA FAPKVIRNSD SIMDTSDDAS KTPASARHKR  1020
GCNCKKSNCL KKYCECYQSG VGCSINCRCE GCKNAFGRKD AYLHAIMESK QEEDHETYEK  1080
RTADMSKEAE RNPSSEQPLT PLPPYKHLVV HQPFLPRNKL PPTQFSLGAG SSSFRKPEGE  1140
SGNEKKPLET VIEDKTEIMP DILNTSPIKA NSPNSKRVSP AHIGSSEPGS ILGKRSNGRK  1200
LILRSIPAFP SLNHNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-17	298	1054	14	120	Protein lin-54 homolog
5fd3_B	3e-17	298	1054	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	804	818	RRRCLDFEVPGKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the first stage of pollen development in uninucleate microspores and bicellular pollen but not in tricellular and mature pollen. {ECO:0000269\|PubMed:18057042}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers with highest levels in developing ovules and microspores. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00154828001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189327	0.0	AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009135824.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like isoform X1
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A3P6AAR7	0.0	A0A3P6AAR7_BRACM; Uncharacterized protein
STRING	Bra001884.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]