PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154517001
Common NameGSBRNA2T00154517001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 371aa    MW: 41346.5 Da    PI: 9.2275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154517001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.6e-14210261255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + +h e+E++RR+++ s ++ Lr+llP  +   ++K s ++ L +Av+YI++Lq
  GSBRNA2T00154517001 210 KIMHREVEKQRRQEMASLYASLRSLLPLEF--IQGKRSTSDQLNEAVNYINYLQ 261
                          568*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.745208260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-11210265No hitNo description
SuperFamilySSF474591.27E-13210276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11212275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-7214266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MENASTVCTN ALLSITVPLQ SSSSPVAPPD PVSFVPSLGS WAKPLYFKPP ATPPEPSTPS  60
GYDPAIVGIQ LAAMWPSLND EILNKPLKGK QSSRSLQPPI EKLPPPELKA DGTLRFPWAA  120
RLSPQSRNLY RAATPTYRLD GTPEVSIPSK VLRLGPENKD EYIIGKFHRC SLPPGGLVHA  180
VVSYMADFQE KKRKRRKEVR VVSNEENLEK IMHREVEKQR RQEMASLYAS LRSLLPLEFI  240
QGKRSTSDQL NEAVNYINYL QRNIKDMSSK RDELMLLSGQ SFESRNKQSR NDNSNHVVIR  300
PCLVGVEIVF SVLQTPLSSV LHVLSEHGLY VLSCFSSNVN GRLIHTLQAE VDDLALVDFA  360
DLNVYLLRLP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195KKRKRR
2190196KKRKRRK
3191196KRKRRK
4192197RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154517001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596574.11e-132PREDICTED: transcription factor bHLH118
RefseqXP_013705563.11e-132transcription factor bHLH118-like
RefseqXP_022563097.11e-132transcription factor bHLH118-like
TrEMBLA0A0D3DG290.0A0A0D3DG29_BRAOL; Uncharacterized protein
STRINGBo7g110280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.15e-73bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]