PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00154048001

Common Name

GSBRNA2T00154048001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 356aa MW: 38173.6 Da PI: 9.9745

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00154048001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.9	9.5e-13	277	330	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ ++ GSBRNA2T00154048001 277 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEMQKN 330 69***************************************8666555555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-10	273	338	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	275	326	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.9E-13	277	332	No hit	No description
SuperFamily	SSF57959	1.05E-9	277	326	No hit	No description
Pfam	PF00170	1.9E-10	277	330	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.40E-24	277	329	No hit	No description
PROSITE pattern	PS00036	0	280	295	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MGTHINFNNL GGGGGGGGDP GGEGFNQMKA TDTAYPLARQ SSLYSRTFDE LQSLLGGPGK 60 DYGSMNMDEL LKSIWTAEEA QAMSMTMTSS AATTMVQPGG NLQRQGSLTL PRTISQKTVD 120 EVWKCLITKD GGGSSGGGGG ESNNAPQRQQ TLGEMTLEDF LFRAGVVRED NNSSQQMGQV 180 TGNNNNGFYG NNGAPGGLGF EFAFTGPVGM VNKSFNGAVN NSLNNTNGLA SFGGTGVTVA 240 ATSPGTSSAE NNSLSPVPYV LNRGRRSNTG LEKVIERRQR RMIKNRESAA RSRARKQAYT 300 LELEAEIEKL KKVNQELQRK QAEMMEMQKN ELKESSKKPW GSKRQCLRRT LTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MGTHINFNNL GGGGGGGGDP GGEGFNQMKA TDTAYPLARQ SSLYSRTFDE LQSLLGGPGK  60
DYGSMNMDEL LKSIWTAEEA QAMSMTMTSS AATTMVQPGG NLQRQGSLTL PRTISQKTVD  120
EVWKCLITKD GGGSSGGGGG ESNNAPQRQQ TLGEMTLEDF LFRAGVVRED NNSSQQMGQV  180
TGNNNNGFYG NNGAPGGLGF EFAFTGPVGM VNKSFNGAVN NSLNNTNGLA SFGGTGVTVA  240
ATSPGTSSAE NNSLSPVPYV LNRGRRSNTG LEKVIERRQR RMIKNRESAA RSRARKQAYT  300
LELEAEIEKL KKVNQELQRK QAEMMEMQKN ELKESSKKPW GSKRQCLRRT LTGPW*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00154048001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013714427.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
Refseq	XP_013724579.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
Swissprot	Q9M7Q2	1e-159	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	M4E0W2	0.0	M4E0W2_BRARP; Uncharacterized protein
STRING	Bra022409.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.1	1e-77	ABRE binding factor 4

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]