PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153974001
Common NameGSBRNA2T00153974001, LOC106412890
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 371aa    MW: 42367.4 Da    PI: 9.2871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153974001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.94.6e-222571551
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          +s + ++++kR+ +++KKA ELS+LC++ev+vi+++s+g+l+++++
  GSBRNA2T00153974001 25 TSSLKATSLAKRQVTVFKKARELSILCGIEVCVIYYGSEGELKTWPK 71
                         578899***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-61372IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-1626104IPR002100Transcription factor, MADS-box
CDDcd002662.89E-162993No hitNo description
PROSITE profilePS5006611.92973IPR002100Transcription factor, MADS-box
PfamPF003197.2E-133069IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-53550IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-55071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSSSSLACLP SSSSSQIRQN HFQKTSSLKA TSLAKRQVTV FKKARELSIL CGIEVCVIYY  60
GSEGELKTWP KDREKVKDMA RRYSQLSDMK RRKGQDDLDK FLKKINKEDS KKKKKMKKVK  120
VESSCKYPDW DPRFDNCSVE QLTELIQSLE HSETKLQHRL RGAVESQRQR NMYYTTMTGQ  180
EQMNHLQQHS NQVSMDQYNH GTGTLPQLPV STSGFNQSQS LAPLPNSLTI HQNPNMESYS  240
RLLGVQETGI NEFLSMNMLP YNNNNINTNN VNVFPNQFHQ NSYNMEDYSG FLGVQETGIN  300
NMSSEDYSGL LWTQGTGING LQNMDMFGYN NNSNNNAYGF SHHQPVQYPG QRAPLGFQYM  360
DRSTQNIRPL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190116RRKGQDDLDKFLKKINKEDSKKKKKMK
2101117LKKINKEDSKKKKKMKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153974001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709219.10.0agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-108AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A397ZCR50.0A0A397ZCR5_BRACM; Uncharacterized protein
STRINGBra022341.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.14e-98AGAMOUS-like 103
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]