PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00153885001 | ||||||||
Common Name | GSBRNA2T00153885001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 352aa MW: 40110.9 Da PI: 8.4809 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.3 | 4.6e-22 | 75 | 134 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t++ql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ GSBRNA2T00153885001 75 SRWNPTPDQLKALEELYQQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 134 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.2 | 3.1e-37 | 74 | 136 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Ptp+Q+k Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ GSBRNA2T00153885001 74 SSRWNPTPDQLKALEELYQQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 136 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.997 | 70 | 135 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-6 | 72 | 139 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.0E-20 | 75 | 134 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.5E-12 | 75 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 75 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.25E-6 | 76 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MWMMGYNEGG ADSFNGGRKL RPLIPRLSSC PSAAANTNSD HRFNMVMTTL TAEQNKRELM 60 MLNSEHQHPP MMVSSRWNPT PDQLKALEEL YQQGTRTPSA DHIQQITAQL RRYGKIEGKN 120 VFYWFQNHKA RERQKRRRQM ENGHDESVFT TTSLVSNHGF HKKYPPGYKF EQTKNWICSV 180 GCDTQPQKPH ELHHQEEPVS IALPTKGNGR YVGNERQSFP GRNAMSQMMQ LAPGHYPYSR 240 QQQHHHELIL NSTTVTSSFS ASNSTVSAAK DTVTVTPLFL RTRAATNTGT CDDNKDRERH 300 EDCVNGELDH QEKTLELFPL RKEGFCISGG DDGKEKESGI HCFYEFLPLK N* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00153885001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251394 | 1e-178 | AY251394.1 Arabidopsis thaliana WOX1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145947.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 1 | ||||
Swissprot | Q6X7K0 | 0.0 | WOX1_ARATH; WUSCHEL-related homeobox 1 | ||||
TrEMBL | A0A397ZCK6 | 0.0 | A0A397ZCK6_BRACM; Uncharacterized protein | ||||
STRING | Bra022267.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7397 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 0.0 | WUSCHEL related homeobox 1 |
Publications ? help Back to Top | |||
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