PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153879001
Common NameGSBRNA2T00153879001, LOC106390627
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 389aa    MW: 44247.1 Da    PI: 8.2087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153879001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.11e-1024116399
                          EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          k l+p  + ks ++ ++p + ++++   ++ +  ++++ ++++sW++ l  ++ ++  +++++ W+eFv++n L + D++ F+++g++ f
  GSBRNA2T00153879001  24 KSLSPGQNWKSkSMRIIPEEILRSNP--EAFEHRVVFTVPWNNSWQLWL--QGDKNClFMIKEDWNEFVDDNLLASDDTLHFTHQGTMYF 109
                          55555555555245589999999995..345567***************..44444459************************9998888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v++f+k
  GSBRNA2T00153879001 110 --QVRIFKK 116
                          ..8998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-1415118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-1416117IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1222117IPR003340B3 DNA binding domain
PROSITE profilePS5086310.09523117IPR003340B3 DNA binding domain
CDDcd100172.51E-834115No hitNo description
PfamPF023625.6E-834116IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-9159244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-7160254IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0048166261IPR003340B3 DNA binding domain
PROSITE profilePS508637.204223261IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-6287372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-8287372IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-4294384IPR003340B3 DNA binding domain
PROSITE profilePS508636.724351388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MKRKKLPERE EIHETQSKKS SFSKSLSPGQ NWKSKSMRII PEEILRSNPE AFEHRVVFTV  60
PWNNSWQLWL QGDKNCLFMI KEDWNEFVDD NLLASDDTLH FTHQGTMYFQ VRIFKKDGKE  120
ILSAPLEVEP PHQEPTTVSA SGGGRQSFAH VENPERYLLN PNNPYFEKTL TKTNTALYVS  180
TPVVKKYELE FGPRNSSMHF LLPDGNKLEG FNKIYSGLHA FLGWANVCQK YNLKQGDTVV  240
CEFELSGRVV TAVRVHFVTA SNSASGRQTS RGRESFDHVE SPERYLFNPN NPYFEKTLTK  300
TNSVLYVSPP LIKKYGLEFG PHSSSIDFLL PDGSKMEGFT KSYSGLYGFL GWAAVCQKYN  360
LKPGDTVVCE FELSRGVVSA VRVHFVNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.43590.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153879001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686587.10.0B3 domain-containing protein At5g25470 isoform X2
RefseqXP_022575339.10.0B3 domain-containing protein At5g25470-like isoform X2
SwissprotQ680D97e-93Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A397ZGH50.0A0A397ZGH5_BRACM; Uncharacterized protein
STRINGBra022263.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.32e-91B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]