PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00153359001 | ||||||||
Common Name | GSBRNA2T00153359001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 540aa MW: 60144.1 Da PI: 4.4834 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.7 | 1.7e-47 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelv++yLk+k+ ++kl++ ++i vd+yk++P++Lp + +k+++++w++F++r++ky++ r+ r t++gyWkatgk GSBRNA2T00153359001 13 APGFRFHPTDEELVMYYLKRKICKRKLRV-NAIGVVDVYKLDPEELPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRCTATGYWKATGKV 101 69***************************.89**************96347788999********************************9 PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +++ vglkktLvfy+gr+p+g++tdWvmhey++ GSBRNA2T00153359001 102 RVISY-NSRSVGLKKTLVFYRGRTPNGQRTDWVMHEYTM 139 99999.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.852 | 12 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-53 | 13 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-25 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MADSCLKGGK FSAPGFRFHP TDEELVMYYL KRKICKRKLR VNAIGVVDVY KLDPEELPGQ 60 SVLKTGDRQW FYFTPRSRKY PNAARSGRCT ATGYWKATGK VRVISYNSRS VGLKKTLVFY 120 RGRTPNGQRT DWVMHEYTMD EDELGRCKNA KEYYALYKLF KKSGAGPKNG EEYGAPFQEE 180 EWADDDIDVP VVRYEDNVSL FDPVNVQLDD LEEILSGIPY APGVPQTFTS IPQVNREEEL 240 QSTLVNNSAR DFLKPQETGD FLPNDMPSSY ESIDVTSAPN NSVLVFEKDY IEMDDLLTPE 300 HGASSAENPA QLLNPGEYGD FNDFDQLFHD VSMSLDMEPI LQGTSADPLS NFADNTSDQE 360 HPFPYQLFQD QTIENKLNNI MDPSPNLNQF SDDLWLEDDN QAFLFDQPQS VISGAFASPS 420 SGVEPGSTNL VNAQDQEGVN GGGGTSPFSS ALWAFMDSIP STPASACEGP INRTFVRMSS 480 FTRIKFSGIA NGTPVTTAVM TKKRSRNRWF LLLSTVGALC AIFWVLMATV QASGRPVFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-41 | 14 | 139 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 38 | RKICKRKL |
2 | 502 | 507 | KRSRNR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.22987 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00153359001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232513 | 0.0 | AC232513.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065E07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604293.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like | ||||
Swissprot | Q9XIC5 | 0.0 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A0D3DKM3 | 0.0 | A0A0D3DKM3_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g027120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 0.0 | NAC domain containing protein 17 |