PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00153126001 | ||||||||
Common Name | GSBRNA2T00153126001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 28596.8 Da PI: 6.5757 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 77 | 99 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ +a+ G C++Gd+C+ +Hg GSBRNA2T00153126001 77 QPICS-YAAAGDCPRGDQCPHIHG 99 68999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.507 | 74 | 101 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 75 | 100 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 77 | 99 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.12E-13 | 133 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 5.3E-10 | 136 | 202 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 5.91E-5 | 142 | 202 | No hit | No description |
SMART | SM00184 | 2.8E-7 | 143 | 200 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.297 | 143 | 201 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 3.4E-7 | 143 | 200 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 167 | 176 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MTGRILQTIC ALSTKEATAL TEADAGTNMS NLLALLIHLP PHLPPTYLLD LSSSPAWTLA 60 SLDDEVNNTD ATKPEDQPIC SYAAAGDCPR GDQCPHIHGD LCPTCQKHCL HPFRPEEREE 120 HKRSCEKKHK QLEALKLSQD VECCVCLERV LSKPTPAERK FGILTECDHA FCIGCIRNWR 180 SSAPSTGMDV NSTLRACPIC RKLSYFVVPS VIWFSDPDEK KEIMDNYRDK LRSKLIASTS 240 ILEMGTVRLG QVASTSTL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00153126001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189271 | 0.0 | AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600569.1 | 1e-148 | PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X2 | ||||
Swissprot | E0X9N4 | 1e-105 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A0D3DQX2 | 1e-133 | A0A0D3DQX2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GA11 | 1e-133 | A0A3P6GA11_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g071350.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-95 | C3H family protein |
Publications ? help Back to Top | |||
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