PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00152015001
Common NameGSBRNA2T00038646001, GSBRNA2T00152015001, LOC106385052
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 232aa    MW: 25909.8 Da    PI: 4.8813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00152015001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-1858108155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  GSBRNA2T00152015001  58 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 108
                          68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1258108IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2159117IPR016177DNA-binding domain
SMARTSM003801.0E-3459122IPR001471AP2/ERF domain
PROSITE profilePS5103222.68259116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-3159117IPR001471AP2/ERF domain
PRINTSPR003671.6E-96071IPR001471AP2/ERF domain
CDDcd000182.81E-3160118No hitNo description
PRINTSPR003671.6E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVSSVSKSTS TDEYDDTIHK ERVSQLHSPY SSVSQESRVE QTDNSKKTKR VKDSGRHPVY  60
HGVRMRNWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGNS AILNFPELVE  120
SFPRPVSLSP RDIQTAALKA AQMEPTTSFA SSSSSSTSSL ESLVLVMDLS RTESEELGEI  180
VELPSLGPSY DVNVENEFVF SDSVDYCFYP PPWGELSEDS YGYNQVFSWD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18571161272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00152015001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680455.11e-169dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-103DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A078GRM81e-168A0A078GRM8_BRANA; BnaC09g28540D protein
STRINGBo2g010530.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-103ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]