PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151957001
Common NameGSBRNA2T00151957001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 651aa    MW: 72133.6 Da    PI: 8.4894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151957001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07299319526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f + G Ck Gd C +aHg
  GSBRNA2T00151957001 299 PCPDFKK-GSCKQGDACEYAHG 319
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.2E-986193IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.18E-890191IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.641136191IPR020683Ankyrin repeat-containing domain
SMARTSM002480.027136166IPR002110Ankyrin repeat
PfamPF000230.015138166IPR002110Ankyrin repeat
CDDcd002041.45E-6138193No hitNo description
SMARTSM00248770171199IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.105.0E-5290321IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4294320IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5299319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028299321IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.362329353IPR000571Zinc finger, CCCH-type
SMARTSM00356110329352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MIHIYRIKEN AITQILRLID LLSPHPPFGS GNVVLSFGHL TFRFRQPLIF RQGHTLVLSM  60
CGLFKKLDTE NNTLSDSLSK PMNNAAECEH SFSALLEFAA DNDVEGFKHQ LSLVSSVNQV  120
SLWYRRHRLV KRMVVEQRTP LMVASLYGSL DVVKLILSFP ETDLNLTCGP DKSTALHCAA  180
SGASVKALDI LKKDEDLSSS LGSSFRSLSS SPDNGSSSLL SLDSVSSPTK AEKKEYPIDP  240
SLPDIKSGVY STDEFRMFSF KIRPCSRAYS HDWTECPFAH PGENARRRDP RKSHYTCVPC  300
PDFKKGSCKQ GDACEYAHGV FECWLHPAQY RTRLCKDGTG CNRRVCFFAH LKEELRPLYA  360
STGSGLPSSP RASMDMASVL NMLPGSPSGG APSSPSGNGV SSMCWPHQNV PALHLPGSNV  420
QLSRLRSSLN ARDMLQEFEM SSSPRFVNHF SSAEVSSSSP RFSDQLAVSS VLSPSHKSAL  480
LNQLQRDKQQ SMLSPIRTNL MSSPKNVEQH SSPRGMEPIS PMNARIKQQQ LLHSRSLSSR  540
EFGSNLPRDM MMQSDSGSPL SPWSSWDQNH KVDWSVQSDE LGRLRKSHSL ANNKEADVTW  600
VQQMVKETAS PRNMNGARPL VQGGLSGDPH RDGRESDILD AWLDQLQLDR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.247030.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151957001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620959.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3P6CWU20.0A0A3P6CWU2_BRAOL; Uncharacterized protein
STRINGBra023379.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]