PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151174001
Common NameGSBRNA2T00151174001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 148aa    MW: 15825 Da    PI: 9.6702
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151174001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.3e-193973135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  GSBRNA2T00151174001 39 CVDCGTSKTPLWRGGPAGPKSLCNACGIKSRKKRQ 73
                         *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.1893369IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-113394IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-123476No hitNo description
Gene3DG3DSA:3.30.50.102.9E-153773IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.09E-123872No hitNo description
PfamPF003206.2E-173973IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403964IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSMTEETKTT KLESAGETSD VENGNCSSSG SGGDTKKTCV DCGTSKTPLW RGGPAGPKSL  60
CNACGIKSRK KRQAAHGIKQ EDNNNKIKKN KSSNDLALDD QTVKSKIKTG TEDLPVMKRS  120
VVEKKRLWMK MGEEERAAVL LMALSCG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.107970.0microspore-derived embryo| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151174001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896326e-92AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
GenBankAC2324696e-92AC232469.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737390.12e-76GATA transcription factor 17-like
RefseqXP_013738174.12e-76GATA transcription factor 17-like
SwissprotQ9LIB59e-50GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A3P5ZYV39e-74A0A3P5ZYV3_BRACM; Uncharacterized protein
STRINGBra012742.1-P3e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138161624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.11e-54GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]