PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00151023001

Common Name

GSBRNA2T00151023001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 314aa MW: 35073.2 Da PI: 6.7233

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00151023001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.7	4.3e-32	166	224	2	59
--SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++p rsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+ GSBRNA2T00151023001 166 EDGYRWRKYGQKAVKNSPYPsRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHP 224 8****************889**********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	6.3E-104	1	313	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	1.7E-33	150	226	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	157	226	IPR003657	WRKY domain
PROSITE profile	PS50811	30.217	160	226	IPR003657	WRKY domain
SMART	SM00774	9.2E-37	165	225	IPR003657	WRKY domain
Pfam	PF03106	3.0E-24	166	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MSNETKDFYN YQFPSSFSLY DMMNLPTSAP SSYGNNGFDL SSYSFTDCLQ SSPGAYDSLL 60 QKNFGLSPSS SEVFNSSIDQ ESKRDVSNDV TGETPTRVSA PSSSSEADHP GEDSGKSQIR 120 KRELAEDGGE ENQNSKKVGK TKKNEEKKQR EPRVSFMTKS EVDHLEDGYR WRKYGQKAVK 180 NSPYPSRSYY RCTTQKCNVK KRVERSFQDP TVVITTYEGQ HNHPIPTNLR GNSAAAAMYS 240 DFMTPRSFTH DMFRTAAYTS GGSVEGALDY GYGQSGYGSV NANPNSSHQN YHQGGEYELL 300 KEILPSIFFK QEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-28	156	226	8	77	Probable WRKY transcription factor 4
2lex_A	8e-28	156	226	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.29149	0.0	flower

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00151023001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430045	0.0	KF430045.1 Brassica rapa WRKY transcription factor 28 (WRKY28) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288987.1	0.0	probable WRKY transcription factor 28
Refseq	NP_001303234.1	0.0	probable WRKY transcription factor 28
Swissprot	Q8VWJ2	1e-178	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A078FB68	0.0	A0A078FB68_BRANA; WRKY transcription factor
STRING	Bra012614.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-168	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]