PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150974001
Common NameGSBRNA2T00150974001, LOC106361378
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32310.3 Da    PI: 4.6826
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150974001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1858111356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  GSBRNA2T00150974001  58 KKRRLRVDQVKALEKNFELENKIEPERKTQLAQELGLEPRQVAVWFQNRRARWK 111
                          45578899*********************************************9 PP
2HD-ZIP_I/II125.32.7e-4057148192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl  +qvk+LE++Fe e+k+eperK++la+eLgl+prqvavWFqnrRAR+ktkqlEkdy  Lk++yd+l+++ ++L++++++L  +
  GSBRNA2T00150974001  57 EKKRRLRVDQVKALEKNFELENKIEPERKTQLAQELGLEPRQVAVWFQNRRARWKTKQLEKDYGLLKSQYDSLRHNFDSLRRDNDSLVLK 146
                          69************************************************************************************9977 PP

          HD-ZIP_I/II  91 lk 92 
                          ++
  GSBRNA2T00150974001 147 IS 148
                          76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.15E-1946115IPR009057Homeodomain-like
PROSITE profilePS5007117.36253113IPR001356Homeobox domain
SMARTSM003892.8E-1656117IPR001356Homeobox domain
PfamPF000464.4E-1658111IPR001356Homeobox domain
CDDcd000869.79E-1658114No hitNo description
Gene3DG3DSA:1.10.10.602.5E-1961120IPR009057Homeodomain-like
PRINTSPR000314.3E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000314.3E-693109IPR000047Helix-turn-helix motif
PfamPF021834.6E-16113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MKRLSNSDSM CGLISNSTDE QNPRGYGHNF HSMLNGYEED GTTVEEYSGN HHMGQSEKKR  60
RLRVDQVKAL EKNFELENKI EPERKTQLAQ ELGLEPRQVA VWFQNRRARW KTKQLEKDYG  120
LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEDVN NDSKVTAESD ISAVKEENVP  180
SSPPEFIEHS TGFDYRRSFT DLCDLLPNST APDGGSSDSC DSSAETSSEN GRLTPPPTVT  240
GGNFLQFVKT EQMEDHDDFL SGEEACCFFS DEQPPSLHWY SASDH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.212020.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150974001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527321e-143AK352732.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013656567.10.0homeobox-leucine zipper protein ATHB-16
SwissprotQ940J11e-168ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLM4D2E20.0M4D2E2_BRARP; Uncharacterized protein
STRINGBra010642.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-159homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]