PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00150656001 | ||||||||
Common Name | GSBRNA2T00150656001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 124aa MW: 14642.7 Da PI: 10.5293 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27.2 | 1.1e-08 | 6 | 28 | 2 | 24 |
NAM 2 ppGfrFhPtdeelvveyLkkkve 24 p+GfrFhPtdee++ +yL++k GSBRNA2T00150656001 6 PVGFRFHPTDEEIIGYYLREKNM 28 89*****************9975 PP | |||||||
2 | NAM | 23.2 | 1.9e-07 | 27 | 70 | 38 | 79 |
NAM 38 diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk 79 ++ +++Pw+Lp++ ++ +++ wyfF+++d+ky + k+k ++t+ GSBRNA2T00150656001 27 NMDSFDPWELPSHSSSirKDDVWYFFARKDNKYVHTKKKVKTTN 70 56689******53333336779***********98888777664 PP | |||||||
3 | NAM | 22.8 | 2.4e-07 | 75 | 115 | 59 | 99 |
NAM 59 yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 Fsk++ ky++g r++r+ +sg+Wk+tg + ++++ + ++ GSBRNA2T00150656001 75 PLFSKKEDKYNRGGRQSRKKSSGFWKKTGVTVNMINPTVQQ 115 579***************************99988864444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-17 | 5 | 69 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.534 | 5 | 123 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-14 | 6 | 105 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-5 | 76 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MVDPHPVGFR FHPTDEEIIG YYLREKNMDS FDPWELPSHS SSIRKDDVWY FFARKDNKYV 60 HTKKKVKTTN ITEEPLFSKK EDKYNRGGRQ SRKKSSGFWK KTGVTVNMIN PTVQQPMTRK 120 KKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00150656001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482381.1 | 9e-26 | PREDICTED: NAC domain-containing protein 5-like isoform X1 | ||||
Refseq | XP_018482388.1 | 8e-26 | PREDICTED: NAC domain-containing protein 5-like isoform X2 | ||||
TrEMBL | M4D342 | 5e-86 | M4D342_BRARP; Uncharacterized protein | ||||
STRING | Bra010895.1-P | 8e-87 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 4e-25 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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