PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150527001
Common NameGSBRNA2T00150527001, LOC106370879
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 338aa    MW: 37960.2 Da    PI: 6.7262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150527001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.2e-12197222126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF H+
  GSBRNA2T00150527001 197 YQPDICKDYKETGYCGYGDSCKFLHD 222
                          67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9195228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009196224IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8196223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-13197227IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9197222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.9E-13256313IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.78E-13271314No hitNo description
PfamPF139205.3E-9271313No hitNo description
SMARTSM001845.0E-5272309IPR001841Zinc finger, RING-type
CDDcd001622.67E-8272313No hitNo description
PROSITE profilePS5008910.66272310IPR001841Zinc finger, RING-type
PROSITE patternPS005180287296IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDSGEEPKT CQQEEASQSQ QVCTFFKKPS KAKNLRKRPA VDADEEDADA KSETSILNNL  60
KKVAKPDNKL FFSSGPSKGS ATTTSEAPEK AVVFHYDSSK EIQVQNDSRA TATLETETDF  120
NQDARAIRER VLKRADEALK GNKNKASGEK LYTGIHGYTD HKAGFRREQT ISSEKAGGSH  180
GPLRASAHIR VSARFDYQPD ICKDYKETGY CGYGDSCKFL HDRGDYKPGW QIEKEWEEAE  240
KVRKRNKAMG VEDEDDDEAD SEEDEDALPF ACFICRESFV DPVVTKCKHY FCEHCALKHH  300
TKNKKCFVCN QPTMGIFNAA HEIKKRMAEE RSKAQGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-692133613326RING finger protein 113A
5z58_M1e-692133613326RING finger protein 113A
6ff4_t1e-692133613326RING finger protein 113A
6ff7_t1e-692133613326RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.48250.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150527001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666326.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLM4EWT30.0M4EWT3_BRARP; Uncharacterized protein
STRINGBra033268.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]