PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00150492001 | ||||||||
Common Name | GSBRNA2T00150492001, LOC106370802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 28663.2 Da PI: 8.7525 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.6 | 9.7e-40 | 5 | 132 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +G+rF Ptdeelv++yL+ k +g + ++++vi++++i++++Pw+Lp + +++++++ wyfF +++k+y++g+r+ r+tksg+Wk+tg GSBRNA2T00150492001 5 VGLRFLPTDEELVDHYLRLKNHGGSntSPVDQVISTINICNFDPWELPrHsSMESKDQVWYFFGRKEKRYNRGERQIRKTKSGFWKKTGV 94 7*******************9998866778889**************95247888999******************************** PP NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 + ++++k ++e++g k++Lvf+ + g+kt+W+mhey GSBRNA2T00150492001 95 TMDIKRKrsaHREKIGEKRVLVFH----SGGSKTNWIMHEYD 132 *****998878888**********....6788*********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.482 | 3 | 152 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.1E-40 | 4 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-23 | 5 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MENMVGLRFL PTDEELVDHY LRLKNHGGSN TSPVDQVIST INICNFDPWE LPRHSSMESK 60 DQVWYFFGRK EKRYNRGERQ IRKTKSGFWK KTGVTMDIKR KRSAHREKIG EKRVLVFHSG 120 GSKTNWIMHE YDAACLSPTQ NMTYTICKVH KKGEAREIYS PGSGIDAHTL SLVTHMNNSG 180 GESSPAASEK PKNAHQLSGF SDKKQETELE EAIHGAFDNL SSYDWKYLLD DAEQSKTVAM 240 QKSLTGFLDW A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-26 | 6 | 152 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-26 | 6 | 152 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-26 | 6 | 152 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-26 | 6 | 152 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-26 | 6 | 152 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-26 | 6 | 152 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-26 | 6 | 152 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-26 | 6 | 152 | 23 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00150492001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013666240.1 | 0.0 | NAC domain-containing protein 5 | ||||
Swissprot | O81914 | 5e-84 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | M4EWW4 | 0.0 | M4EWW4_BRARP; Uncharacterized protein | ||||
STRING | Bra033299.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 2e-86 | NAC domain containing protein 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 106370802 |
Publications ? help Back to Top | |||
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