PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150402001
Common NameGSBRNA2T00150402001, LOC106422994
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 312aa    MW: 33237.6 Da    PI: 6.5154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150402001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09164208554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  GSBRNA2T00150402001 164 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 208
                          99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14157218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6164208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MATNNNNNLS DQPPSDDFFE QILGISNFSA SSSSGGLSGL PGGLSGGVGP PPPMMLQLGS  60
GEEGSHHNHM GVGPIGGGGG PLGFHNGMFP LGLSLDQGGK GQGFLKPDGS GKRFQDDVVD  120
NRCSSMKPVF HGQPMTQPAP PMPHQQSSIR PRVRARRGQA TDPHSIAERL RRERIAERIR  180
ALQELVPTVN KTDRAAMIDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TEMPLSSSTE  240
DETQAVWEKW SDDGTERQVA KLMEENVGAA MQLLQSKALC IMPVSLAMAI YHSQPPDTSS  300
SVVKPEMNPP Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150402001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119583.10.0PREDICTED: transcription factor bHLH7
RefseqXP_013719234.10.0transcription factor bHLH7
SwissprotQ93Y001e-162BH007_ARATH; Transcription factor bHLH7
TrEMBLM4EX330.0M4EX33_BRARP; Uncharacterized protein
STRINGBra033368.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-139bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]