PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00149729001 | ||||||||
Common Name | GSBRNA2T00149729001, LOC106429400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 301aa MW: 33905.1 Da PI: 4.366 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.4e-18 | 55 | 108 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL++rqV vWFqNrRa++k GSBRNA2T00149729001 55 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQTRQVAVWFQNRRARWK 108 5568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126 | 1.7e-40 | 54 | 146 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglq+rqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++e+L +e GSBRNA2T00149729001 54 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQTRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRSDNESLLQE 143 69*************************************************************************************999 PP HD-ZIP_I/II 91 lke 93 +++ GSBRNA2T00149729001 144 ISK 146 976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-18 | 44 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-16 | 53 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.26E-15 | 55 | 111 | No hit | No description |
Pfam | PF00046 | 2.4E-15 | 55 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-19 | 57 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.2E-17 | 110 | 151 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MMKRLRSSDS VGGLISLCHT SSTDEQSPRR YGSMLEGYDE DEEEAIAEER GQTEKKRRLS 60 INQVKALEKN FELENKLEPE RKVKLAQELG LQTRQVAVWF QNRRARWKTK QLEKDYGVLK 120 TQYDSLRHNF DSLRSDNESL LQEISKLKSK LNGGEEEEEE NNAVAMESDF SVKEEEVSLP 180 ENITEEPPSS PPELLEHSDS FNYRSFTDLR DLLPLKAAAS SFAAAGSSDS GDSSAVLNEE 240 SSSNVTVTPT AVPGGSFFQF VKMEQTEDHD DFLSGEEACG FFSDEQPPSL HWYSAVDHWT 300 * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 102 | 110 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.2318 | 0.0 | flower| leaf| seed| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00149729001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY336103 | 0.0 | AY336103.1 Brassica napus homeodomain-leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631195.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Refseq | XP_013725603.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | P46668 | 1e-154 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A0D3C176 | 0.0 | A0A0D3C176_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g149670.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-132 | homeobox protein 6 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106429400 |
Publications ? help Back to Top | |||
---|---|---|---|
|