PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00149242001

Common Name

GSBRNA2T00149242001, LOC106445009

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 285aa MW: 31724.9 Da PI: 7.7193

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00149242001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv+++kq g+W+t +++ g+ R++k+c++rw +yl GSBRNA2T00149242001 14 KGPWTPEEDEILVEYIKQNSHGSWRTLPKKAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.1	7.6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l v++++ lG++ W++Ia+ ++ gRt++++k+ w+++l GSBRNA2T00149242001 67 RGSFTPEEEKLVVQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.095	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.87E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-9	16	61	No hit	No description
PROSITE profile	PS51294	25.04	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.9E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.14E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGRKPCCDKE GLKKGPWTPE EDEILVEYIK QNSHGSWRTL PKKAGLLRCG KSCRLRWTNY 60 LRPDIKRGSF TPEEEKLVVQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKHLLSMG 120 LDPKTHEALA SYGLAKHAPA SPTTRHMAQW ESARVEAEAR LSKESMLFSS CVEVKYDCDH 180 FLRIWNSKIG ESFRNIASCD ESTTTSQSPC SRKTSSSSAL VKSSTSSCVG KEIVMGIHHG 240 SDSSSLCWNN LEGVSSDSSF QLLLDFPISD DDMSFLEENI GSYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-29	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269\|PubMed:19232308}.
Uniprot	TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269\|PubMed:19232308, ECO:0000269\|PubMed:21750030}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269\|PubMed:19232308, ECO:0000269\|PubMed:21750030}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00149242001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013741941.1	0.0	transcription factor MYB41 isoform X2
Swissprot	Q9M2D9	1e-166	MYB17_ARATH; Transcription factor MYB17
TrEMBL	A0A397ZIR6	0.0	A0A397ZIR6_BRACM; Uncharacterized protein
STRING	Bra014446.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6982	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-148	myb domain protein 17

Link Out ? help Back to Top
Entrez Gene	106445009

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]