PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00149182001

Common Name

GSBRNA2T00149182001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 313aa MW: 35053.5 Da PI: 9.8091

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00149182001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	348.8	1.3e-106	1	312	1	301
GAGA_bind 1 mdddgsre..rnkg.yye....paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 mdd g+r+ r+k+ + + ++++ ++ +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l+a GSBRNA2T00149182001 1 MDDGGHRDngRHKApQGQqwmmQHQQQHQPSMKQVMSIIAERDAAIQERNLAVSERKSAVAERDMAFLQRDTAIAERNNAIMERDSALTA 90 999999888888874333444433344444567******************************************************* PP GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172 l++++ns+a++ q ++ ++ +++ ql+e + e ++++ ++ + + +++ +++k++k+ ++++ pk++++ kk+++ + GSBRNA2T00149182001 91 LQYRDNSMATSR----QHQPHIHHQHHMLQLTEnNAYETREIGTSPPPTTGSALASAKPKRGRKVKEPKAAANKRGPKTQRKVKKENEDD 176 **966554....44555555555555333133333334444444444444455555555555555555555554444433333222 PP GAGA_bind 173 kskkkvkkesader................skaekksidl..vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244 + sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PL GSBRNA2T00149182001 177 L------------SkimsldyseeeeeaagSKSDWKSQEMmvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPL 254 2............12333444444556677*****98889****************************************** PP GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301 P+ +++++aR++grKmS++af+klL++LaaeG +dls pvDLkd WAkHGtn+++ti+ GSBRNA2T00149182001 255 PALPNKKHARVGGRKMSGSAFNKLLSRLAAEGhHDLSSPVDLKDRWAKHGTNRYITIK 312 ****************************88*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.9E-99	1	312	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.4E-142	1	312	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDDGGHRDNG RHKAPQGQQW MMQHQQQHQP SMKQVMSIIA ERDAAIQERN LAVSERKSAV 60 AERDMAFLQR DTAIAERNNA IMERDSALTA LQYRDNSMAT SRQHQPHIHH QHHMLQLTEN 120 NAYETREIGT SPPPTTGSAL ASAKPKRGRK VKEPKAAANK RGPKTQRKVK KENEDDLSKI 180 MSLDYSEEEE EAAGSKSDWK SQEMMVGLNQ VVYDETTMPP PVCSCTGVLR QCYKWGNGGW 240 QSSCCTTTLS MHPLPALPNK KHARVGGRKM SGSAFNKLLS RLAAEGHHDL SSPVDLKDRW 300 AKHGTNRYIT IK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00149182001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013742058.1	0.0	protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_013742059.1	0.0	protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_022573580.1	0.0	protein BASIC PENTACYSTEINE6-like isoform X1
Swissprot	Q8L999	1e-168	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A3P6C7Z4	0.0	A0A3P6C7Z4_BRACM; Uncharacterized protein
STRING	Bra014504.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6169	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-156	basic pentacysteine 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]