PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00148867001

Common Name

GSBRNA2T00148867001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 338aa MW: 38095.3 Da PI: 4.7304

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00148867001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.7	2.3e-49	19	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF++r kky++g++++r+tk gyWkatgk++ GSBRNA2T00148867001 19 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCPRGKKYPHGSQNRRTTKMGYWKATGKER 107 69**********************999.99***********778888999****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s ++e++g+k+tLvf+ grapkge+t+W+mhey++ GSBRNA2T00148867001 108 DVKS-SSEVIGTKRTLVFHIGRAPKGERTEWIMHEYSM 144 .999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.28E-54	14	160	IPR003441	NAC domain
PROSITE profile	PS51005	52.455	18	161	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	20	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MEVDPVGVSV DTVEASTVFP GFKFSPTDVE LISYYLKRKM DGLERSVEVI PETDIYNFEP 60 WDLPDKSIVK SDTEWFFFCP RGKKYPHGSQ NRRTTKMGYW KATGKERDVK SSSEVIGTKR 120 TLVFHIGRAP KGERTEWIMH EYSMKGSPLD DALVVCRLRR NREFHKAPEP NLAADKHMIL 180 PNDPASSGRP SDWDSMIDFY LAGEPGENLL TEMAETSRNV QVHADEDFFA DILSDEIINL 240 DEAVTTGKTP NEVPTLESAA SAIRVLPLPT MIDKQMVSLL EERQPQEKEG KESSCTEPLS 300 SCFVGLYSIK TVNRVRWDVI IGAVALIAML FYLEEAM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-43	10	162	9	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-43	10	162	9	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-43	10	162	9	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-43	10	162	9	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-43	10	162	12	169	NAC domain-containing protein 19
3swm_B	7e-43	10	162	12	169	NAC domain-containing protein 19
3swm_C	7e-43	10	162	12	169	NAC domain-containing protein 19
3swm_D	7e-43	10	162	12	169	NAC domain-containing protein 19
3swp_A	7e-43	10	162	12	169	NAC domain-containing protein 19
3swp_B	7e-43	10	162	12	169	NAC domain-containing protein 19
3swp_C	7e-43	10	162	12	169	NAC domain-containing protein 19
3swp_D	7e-43	10	162	12	169	NAC domain-containing protein 19
4dul_A	7e-43	10	162	9	166	NAC domain-containing protein 19
4dul_B	7e-43	10	162	9	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in plant cell division. {ECO:0000269\|PubMed:16803883}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00148867001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974764	1e-180	KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131870.1	0.0	PREDICTED: NAC domain-containing protein 89-like
Swissprot	Q94F58	0.0	NAC89_ARATH; NAC domain-containing protein 89
TrEMBL	A0A398A145	0.0	A0A398A145_BRACM; Uncharacterized protein
STRING	Bra006619.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4309	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	0.0	NAC domain containing protein 89

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]